TCONS_00019630-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019630-protein
Unique NameTCONS_00019630-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length115

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019630-protein ID=TCONS_00019630-protein|Name=TCONS_00019630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MEHCRKLVIVGDDSIGKTSLLYVYKSKQFLTDYVPEVFVEGGYLAKITLD
IDNSVELVFWDTIGHRQYDRLRPLSYYDTDVLLLCFAVEQPDSLKNISEK
WADEPKKRLSTNIHN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011044XLOC_011044Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019630TCONS_00019630Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 5..26
score: 40.14
coord: 48..70
score: 25.93
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 7..115
e-value: 2.0E-11
score: 26.7
NoneNo IPR availableGENE3D3.40.50.300coord: 72..114
e-value: 4.6E-6
score: 25.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 4..71
e-value: 1.9E-13
score: 49.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 3..104
e-value: 2.8E-14
score: 51.2
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 6..112
e-value: 1.9E-23
score: 82.7
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 1..115
score: 11.897
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..107

Blast
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BLAST of TCONS_00019630-protein vs. Swiss-Prot (Human)
Match: RHOC (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.784e-33
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 0 
Query:    5 RKLVIVGDDSIGKTSLLYVYKSKQFLTDYVPEVFVEGGYLAKITLDIDNSVELVFWDTIGHRQYDRLRPLSYYDTDVLLLCFAVEQPDSLKNISEKWADEPK 106
            +KLVIVGD + GKT LL V+   QF   YVP VF    Y+A I +D    VEL  WDT G   YDRLRPLSY DTDV+L+CF+++ PDSL+NI EKW  E K
Sbjct:    6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--ENYIADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
The following BLAST results are available for this feature:
BLAST of TCONS_00019630-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOC3.784e-3356.86Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
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