TCONS_00020016-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020016-protein
Unique Name	TCONS_00020016-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	539

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020016-protein ID=TCONS_00020016-protein|Name=TCONS_00020016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MEVQDCNEQQNESGESPETINERRALKSSLSDSGNTSPKATPDISKTEES
KTTPCEVSKTEGTIEFQLYKRRWIVLAVFSFISMSNEVIWISLSSITSVV
KEYYNVDYLAVNWLSMIYMLFYVFVFLAALALDRLGLKFTIMIGAVLNGL
GSCLRLIGTNRDGFIFVFLGNASAALAQCFILFVPPSLAATWFGENERAT
ASALGVLMNMMGVAIGFLMGGTMVPGTQDYDGEVRDGMLKTLLIQAIFCT
VMVILCLILVHDFPKSPPSMSQLLLIQNKQRKLEQKKKNKNISKGKQIES
IADENQHMNFKTSLALLVKDVNFHLVAQAYGIYFGLFGAYNTVLNQMCMN
HFPGKEQEIGLMGFTSVILGLIGILLAGIWLDRTRCYKLVSIGTFIACSV
SLLTFTLILIYSGNFILVYVSFSIFGFFSYPYMTIGLEHAAEITYPISEG
LTSGILLLFGNMYAITLTFICGAIIDKGRSDIAGYLMTVLYLVGMVTVIL
MKGELKRWRADISNKNDEGLGTKGTGTKGSCCIELKEKY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011248	XLOC_011248	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020016	TCONS_00020016	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 276..296
None	No IPR available	GENE3D	1.20.1250.20		coord: 46..302 e-value: 5.7E-24 score: 84.0
None	No IPR available	GENE3D	1.20.1250.20		coord: 308..518 e-value: 2.8E-19 score: 68.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 80..274 e-value: 8.9E-15 score: 54.4
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 72..506 score: 11.505
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 76..502 e-value: 5.76928E-22 score: 95.0732
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 304..510 coord: 63..269

Blast

[Close]

BLAST of TCONS_00020016-protein vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.838e-75
Identity = 149/446 (33.41%), Postives = 241/446 (54.04%), Query Frame = 0

Query:   67 QLYKRRWIVLAVFSFISMSNEVIWISLSSITSVVKEYYNVDYLAVNWLSMIYMLFYVFVFLA-ALALDRLGLKFTIMIGAVLNGLGSCLRLIGTNRDGFIFVFLGNASAALAQCFILFVPPSLAATWFGENERATASALGVLMNMMGVAIGFLMGGTMVPGTQDYDGEVRDGMLKTLLIQAIFCTVMVILCLILVHDFPKSPPSMSQLLLIQNKQRKLEQKKKNKNISKGKQIESIADENQHMNFKTSLALLVKDVNFHLVAQAYGIYFGLFGAYNTVLNQMCMNHFPGKEQEIGLMGFTSVILGLIGILLAGIWLDRTRCYKLVSIGTFIACSVSLLTFTLILIYSGNFILVYVSFSIFGFFSYPYMTIGLEHAAEITYPISEGLTSGILLLFGNMYAITLTFICGAIIDKGRSDIAGYLMTVLYLVGMVTVILMKGELKRWRAD 511
            ++ +RRW V+ VFS  SM N   WI   SI ++   +Y V   A++WLSM YML Y+ + L  A  L++ GL+   + G+ LN LG+ ++L       F    +G    ++AQ FIL +P  +A+ WFG NE +TA ++ V  N +G+AIGFL+   +VP  +D D E+   +     I     T+++IL +I+  + PK PPS +Q L                         S A  +   ++  S+A L K++NF L+   YG+  G F A +T+LN+M + H+PG+E   G +G T VI G++G +++GIWLDR++ YK  ++  +I   V ++ +T  L   G+  +V+++    GFF   Y+ +G E A E+TYP SEG++SG+L +   ++ I  T   G IID   +      + V   +G      +K +L+R +A+
Sbjct:   79 KVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRD-ELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSL-------------------------SYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKAN 497

The following BLAST results are available for this feature:

BLAST of TCONS_00020016-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020016-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FLVC2	6.838e-75	33.41	Feline leukemia virus subgroup C receptor-related ...	[more]

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TCONS_00020016-protein (polypeptide) - C. hemisphaerica