TCONS_00020038-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020038-protein
Unique Name	TCONS_00020038-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	462

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020038-protein ID=TCONS_00020038-protein|Name=TCONS_00020038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MKLIHMDLKGAPPKVEYFLEVMEISQKFGATGLLIEYEDMFPWSGDLKMV
ARKNAYTQEQLKNILNKAAELKLEIVPLIQTFGHLEFVLKHKEFATLRAK
KDVTTSICPLNNQSLPLIKKMLDQVVDFHQNLKWIHLGGDEVWNVKSCDR
CHGNYTDVDLFHRHMIPIMQYVKSKSENLRPVIWDDMMRKWNVSDMKVMA
KHVVPMVWGYVSDLSTYRSYPTDMWEKYMQAFPTIFFASSFKGALKPWSN
FVPTQQHLDNHLSWLKIFKKYQDNGKKVEGVALTGWSRFDHYGPLCETLP
AGIPTMVLCLSILDHGGFDKDVHDKTSKLLGFPKPFQTNVNYFKLYKPEN
ATFKGQQFYNFVGTFEKYNGWKEWAEVRLKGWSRPYNVKKGHLSYFQLNE
TRHGLEKSSRELMKLRVKGKEVLSNFFDDETVTEWLEDKIDATALVIDKE
LKQVKEMISKHF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011262	XLOC_011262	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020038	TCONS_00020038	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015883	Glyco_hydro_20_cat
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Molecular Function**
Term	Definition
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	GENE3D	3.20.20.80		coord: 1..304 e-value: 1.2E-53 score: 182.3
None	No IPR available	CDD	cd06565	GH20_GcnA-like	coord: 1..311 e-value: 2.54418E-97 score: 296.425
IPR015883	Glycoside hydrolase family 20, catalytic domain	PFAM	PF00728	Glyco_hydro_20	coord: 52..212 e-value: 1.8E-14 score: 53.8
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 2..305

Blast

[Close]

BLAST of TCONS_00020038-protein vs. Swiss-Prot (Human)
Match: HEXDC (Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 7.369e-86
Identity = 152/469 (32.41%), Postives = 245/469 (52.24%), Query Frame = 0

Query:    1 MKLIHMDLKGAPPKVEYFLEVMEISQKFGATGLLIEYEDMFPWSGDLKMVARKNAYTQEQLKNILNKAAELKLEIVPLIQTFGHLEFVLKHKEFATLRAKKDVTTSICPLNNQSLPLIKKMLDQVVDFHQNLKWIHLGGDEVWNVKSCDRC-----HGNYTDVDLFHRHMIPIMQYVKSKSENLRPVIWDDMMRKWNVSDMKV--MAKHVVPMVWGYVSDLSTYRSYPTDMWEKYMQ-AFPTIFFASSFKGALKPWSNFVPTQQHLDNHLSWLKIFKKYQDNGKKVEGVALTGWSRFDHYGPLCETLPAGIPTMVLCLSILDHGGFDKDVHDKTSKLLGFPKPFQTNVNYFKLYKPENATFKGQQFYNFVGTFEKYNGWKEWAEVR----LKGWSRPYNVKKGHLSYFQLNETRHGLEKSSRELMKLRVKGKEVLSNFFDDETVTEWLEDKIDATALVIDKELKQVKEM 457
            M+L+H+DLKGAPPKV Y  E+  + +  GA GLLIEYEDMFP+ G L+++  K AY+  ++K IL+ A   +LE++PL+QTFGH+EFVLKH  FA LR       ++ P   +SL L+  M+DQV++ H   + +H+G DEV+ +   +           +   L   HM  +   VK++  ++ P++WDDM+R      +    + + V P++W Y +DL  +      + +KY +  FP ++ AS+FKGA  P     P + HL NH+ WL++      +   ++G+ LTGW R+DHY  LCE LPAG+P++  CL +L  GGFD+DV  K   LLG      +++      +    +F G      V     +      A +     + GW  PY+ ++  +    +   +        +   L  + +  L   F  + V EWLE+ +  +   +   L+ + E+
Sbjct:    9 MRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGK--VLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTD--SLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGI-----SSLEKTDPVREGAGSFPGSNILALVTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTLVQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEV 468

The following BLAST results are available for this feature:

BLAST of TCONS_00020038-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020038-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HEXDC	7.369e-86	32.41	Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=...	[more]

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TCONS_00020038-protein (polypeptide) - C. hemisphaerica