TCONS_00020096-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020096-protein
Unique NameTCONS_00020096-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2058

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020096-protein ID=TCONS_00020096-protein|Name=TCONS_00020096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2058bp
MATTLMDVHSRPLKRQKLGIPDLYPQSQKQEEDDLSEANVKRGFNYKPAV
NNEYGTARDTAFSIHLSKYVNQFNKILYQKQKVNTLQDNKKKVQVNVKET
FWHVTGKSKGQVTKWMQDLASNKPLSQLGKKIPFFNKKEEIPTCLASNNV
SLYRATWFLKMINAAYQSSIAESKTKKRQSFDSHSEWTNTFLKFMREQLL
KLSEYYGRPYTSLNQRSPMEIENATSYWNYAVQLTECLMRQILLDKHEFL
AQIIDLIDKQKFNHDEALLKHVLPLVLQHLDSILQSQILSRSLANNAIKK
LNALNASAESMQKEEAENDLKLNTERSFPLQPMFTEFKECQQHASLVTIL
SGIVQAITLRCPAALIWSITKVNASSNDPNKNQVLGSPLDKLPCPPSELI
IGSNEDEADKNDSEEIMNALKEKEMEIRQRSIAVENRWLCPENQSTKKAD
ENYFLLDFLDQMDFTKCDGKFKSDVIYDLIFKDKNVSDYDEQVAIDKQSI
LLLCQWATSRKRHGQHRAIVCADVIKKRNKYLLELQSGESMTEEEVEMTS
NYPFQQLLFQFLDEAAPTPESIDVNQDAQFQSLIIFFGELINSNTFSHDQ
YLCTLIARNDLSSSVLKKLDFMFPSTDDGAGGNVSSSSGSTSSNKKAKGK
SNNKKESTGKTSSDHDYQSGEFASEFILGGDDNALPLFSMDFTENSSSSH
PSEEDADTAKKEHRAGVHLFYVLHFPHPSINKDSHDNNQRMVLLFGFGGR
RQEFLKKLKEIKNELSQCFNGVFTTANGKEEDLKKNSGKMKEKINAVLIK
FTALPVYERHNLSTKFLHQMIGKKHTTIDRYGACSELPTASSLYLLYELL
SLSFNIQGIITLTESLLVQQDNMEPKIANTKTDVHIPSKLYLVSAAIRNN
LQSFLMDPELISSIFQGLLQAAQSSNCSSGQRCALVLLHSMYNTSPVLSE
RFEKRFASFSLKIESGILSSHKPSNTNLLWEQQFLKEHFEKPGNFPLEFI
WESKLTNERPAEIYSFVCNALLAVCKTTNQQRLYALSSFCCEVASHFSNM
CTEFLGIINAFCSSLTTSGLGYEQTTQSVNLKEKSTVQALAFFTSVLVAR
QIIKLNDLLSEVLYPALKVTSKKSTKGLQLVCRILEQIFVLNPFPAPKLK
LGQTHPFALDVFDAGLLRGEMNKANLSSVLSVLKRLYLQAEKGNSSVDRQ
KTEDRDNLFSTLFNADSGDSFDSAYSKGKSDNKSPSNSISDVIKRSLQLI
INQSWLQDKVLSNENKNTIMKAVLDSELKSHQSRHFISLILNQETKSSPA
VNVSNIQQITNRICMTLDKWSLHNASLELQLLLKMASKEEHQSILTAIGR
SILSTLTETSDVGHRRSLVGPLISKLSISIQGRILKSASETLEKGKWWIP
GGNNKLSADSQSILFALISSCLQNQEENKNMFLGSLQKQLQALVTAQKED
KIDLFSSQFSGLVDAVRLRLNLVGMLFDNLLKSPSVLGDWAITLFSLLLS
GIIPYTENTVLFTNVTDMVVILLQKIHMNEIAQMSQQQASGQLQTQPLPN
NEILRFNLVVRKMRKELSQRPSTEIGTLCEELLPLLTGPCEIICSEPTYS
LETLQNINKEKPNKPESSNQPEQIRKRTHVQSINAWDLLEDSKNSGPLNL
AMFGAVRVEKRPLRYVEESLRLIHHSHQKRKPLSYFLSDALPEEDENPAT
PSTPSGGPATPLVDPNVNLSNMNSDLALQQKQKFELQRAKQMMQMNAQQL
QQQQANKLKSKQMLQQNNQQDMSNQQQLPQNVALSMQQQLQNQQNQQLQN
KPNPQQIQSNPQQIQMQNQQLQQNPQQQFQSNQQTQQLQQNQNQMQQNVQ
QIQQNAQQIQQQNTQQQMQNNQQQFQSNQQQSQMQQNPQQQLQQQNNPQQ
QLQQNNPQMQQSMMSNQQQQQQQQQQQQMLQQNQNQQVGNSNNMMNNFQQ
QQLPPNMNVNSIMQGGGLPNIRSNSVMANNNPQQTKSALQNMLARKSVNN
PVISGGATTVSQSNPLMQLQQQNFNRVPNMQQSNISAMNXYIPPPPPMYG
HFLEEPIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011298XLOC_011298Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020096TCONS_00020096Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019035Mediator_Med12
IPR021990Mediator_Med12_LCEWAV
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1733..1767
NoneNo IPR availableCOILSCoilCoilcoord: 294..314
NoneNo IPR availableCOILSCoilCoilcoord: 410..430
NoneNo IPR availableCOILSCoilCoilcoord: 1835..1869
NoneNo IPR availableCOILSCoilCoilcoord: 1916..1936
NoneNo IPR availableGENE3D1.20.58.60coord: 410..1801
e-value: 1.8E-4
score: 21.0
IPR019035Mediator complex, subunit Med12SMARTSM01281Med12_2coord: 100..160
e-value: 2.9E-20
score: 83.3
IPR019035Mediator complex, subunit Med12PFAMPF09497Med12coord: 110..160
e-value: 1.2E-11
score: 44.6
IPR021990Mediator complex, subunit Med12, LCEWAV-domainPFAMPF12145Med12-LCEWAVcoord: 284..744
e-value: 4.0E-81
score: 273.2

Blast
BLAST of TCONS_00020096-protein vs. Swiss-Prot (Human)
Match: MD12L (Mediator of RNA polymerase II transcription subunit 12-like protein OS=Homo sapiens GN=MED12L PE=1 SV=2)

HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 537/1809 (29.68%), Postives = 881/1809 (48.70%), Query Frame = 0
Query:    2 ATTLMDVHSRPLKRQKLGIPDLYPQSQKQEEDDLSEANVKRGFNYKPA-VNNEYGTARDTAFSIHLSKYVNQFNKILYQKQKVNTLQD-NKKKVQVNVKETFWHVTGKSKGQVTKWMQDLASNKPLSQLGKKIPFFNKKEEIPTCLASNNVSLYRATWFLKMINAAYQSSIAESKTKKRQSFDSHSEWTNTFLKFMREQLLKLSEYYGRPYTSLNQRSPM--EIENATSYWNYAVQLTECLMRQILLDKHEFLAQIIDLIDKQKFNHDEALLKHVLPLVLQHLDSILQSQILSRSLANNAIKKLNALNASAESMQKEEAENDLKLNTERSF-------------PLQPMFTEFKECQQHASLVTILSGIVQAITLRCPAALIWSITKVNASSNDPNKNQVLGSPLDKLPCPPSELIIGSNEDEADKNDSEEIMNALKEKEMEIRQRSIAVENRW---LCPENQSTKKADENYFLLDFLDQMDFTKCDGKFKSDVIYDLIFKDKNVSDYDEQVAIDKQSILLLCQWATSRKRHGQHRAIVCADVIKKRNKYLLELQSGESMTEEEVEMTSNYP--------FQQLLFQFLDEAAPTPESIDVNQDA---QFQSLIIFFGELINSNTFSHDQYLCTLIARNDLSSSVLKKLDFMFPSTDDGAGGNVSSSSGSTSSNKKAKGKSNNKKESTGKTSSDHDYQSGEFASEFILGGDDNALPLFSMDFTENSSSSHPSEEDADTAKKEHRAGV----------HLFYVLHFPHPSINKDSHDNNQRMVLLFGFGGRRQEFLKKLKEIKNELSQCFNGVFTTANGKEED---LKKNSGKMKEKINAVLIKFTALPVYERHNLSTKFLHQMIGKKHTTIDRYGACSELPTASSLYLLYELLSLSFNIQGIITLTESLLVQQDNMEPKI---ANTKTDVHIPSKLYLVSAAIRNNLQSFLMDPELISSIFQGLLQAAQ----SSNCSSGQRCALVLLHSMYNTSPVLSERFEKRFASFSLKIESGILSSHKPSNTNLLWEQQFLKEHFEKPGNFPLEFIWESKLTNERPAEIYSFVCNALLAVCKTT-NQQRLYALSSFCCEVASHFSNMCTEFLGIINAFCSSLTTSGLGYEQTTQSVNLKEKSTVQALAFFTSVLVARQIIKLNDLLSEVLYPALKVTS---KKSTKGLQLVCRILEQIFVLNPFPAPKLKL-----GQTHPFALDVFDAGLLRGEMNKANLSSVLSVLKRLYL--QAEKGNSSVDRQKTEDRDNLFSTLFNADSGDSFDSAYSKGKSDNKSPS---NSISDVIKRSLQLIINQSWLQDKVLSN-ENKNTIMKAVLDSELKSHQSRHFISLILNQETKSSPAVNVSNIQ-QITNRICMTLDKWSLHNASLELQLLLKMASKE-------EHQSILTAIGRSILSTLTETSDV-----------------------------------GHRRS--LVGPLISKLSISIQGRILKSASETLEKGKWWIPGGNNKLSAD----------SQSILFALISSCLQNQEENKNMFLGSLQKQLQALVTAQKEDKI--DLFSSQFSGLVDAVRLRLNLVGMLFDNLLKSPSVLGDWAITLFSLLLSGIIPYTENTVLFTNVTDMVVILLQKIHMNEIAQMSQQQASGQLQTQPLPNNEILRFNLVVRKMRKELSQRPSTEIGTLCEELLPLLTGPCEIICSEPTYSLETLQNINKEKPNKPESSNQPEQIRKRTHVQSINAWDLLEDSKNSGPLNLAMFGAVRVEKRPLRYVEESLRLIHHSHQKRKPLSYFL 1687
            A  L+    RPLKR +LG PD+YPQ  KQ+ED+L+  NVK+GFN +PA   +E+G+AR+    I+ SK    F+ IL +K K+NT QD  KKK QVN K+ +W VT +S+  +  W  DLA NKPLS L KK+P  +KKE++   LA  +V + RATW +KM   AY S+I+E+K KKRQ+ D + EWT    +++REQL K+S++Y    ++ +   P+  E+E A   W Y  +L   + ++ +L+KHE+L  I+D+++K +   D+ L   +  L+LQ+ D  +QS  LSR LA    ++L+ L + + ++    + + +      S              P+Q  F++F  C QH  LV  LS ++Q +TL CP+AL+W     N S+N+ NK+   GSPLD L   PS L +       +    +++   + E E +I+QR  AVE RW    C E+ +          L+ LD+  F + D     + +Y  IF      D  E    D+  + LLC+WA S KR G+HRA+  A +++KR   +   + GES   +E E  S+          FQ +L +FLD  AP+    D N +    +F +L++ F E I  + FSHD Y+CTLI+R DLS                            T+S +       N  E   K   DHD +   F+           +P  S +    S     S       K+E    +          HL Y  HFP P     SH+ NQR +LL+G G  R E   +LK+I  ++ +  N   TT  G  ++    +KN  +    +  V  K   L  +++H ++++  + ++  +  T    G    LP A  + L+++L+  + NI G+I     LL +   +E ++   +++    +       + A +R      +++P+  + +F+GL    +     S CSS +RC L  L+ +Y +   L  +F   F+S   K++  I ++  P+N+NL W+  F+ +  E P    + +    K+ ++  A  YSFVCN L+ VC    +  R+  +++F  E+ +  + + +E+LG++ A C S +    G+     +V++ + S   +LA F ++L+ARQ   L D++  V  P+L   +     +  G ++ CR+L     L+ F AP+        G+  P      D  LL    N   + +V +VLK + +   A+ GN+SV   K +D       L    + D   +A    KS  KS S    ++ +  +  L+ I  Q W+ +  L   E   T  + +LD  L + Q++  + LI              N+Q Q   RI   L++W+L  + LELQL++K   K+       E  ++L  I ++ +    +++D+                                     RR   LV PLI++L  S+QGR+LK+A E LEKG+    G ++K   D          SQ    +L+ +CL+ Q+E +   L SLQ Q+  +++  +E++   D+ + Q   + +A++LRLNLVG +FD + +S     DWA+ L  ++ SG +    N  LFT V DM+ +L+     ++++  S   +           N+    NL V+K++KEL  + S  I  +  +LLPL    C++I  EP   + +L +    K    +S ++ + ++  T  Q ++ WDL E  KN  PL+ A FG VRV++R ++Y E+   L++H+H   KP SY+L
Sbjct:    3 AFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIV--INPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNAKDNYWLVTARSQSAIHSWFSDLAGNKPLSILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKM-TCAYYSAISEAKIKKRQAPDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPEVEQAMKQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLP-LMLQYSDEFVQSAYLSRRLAYFCARRLSLLLSDSPNLLAAHSPHMMIGPNNSSIGAPSPGPPGPGMSPVQLAFSDFLSCAQHGPLVYGLSCMLQTVTLCCPSALVW-----NYSTNE-NKSANPGSPLDLLQVAPSSLPMPGGNTAFN----QQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSSSLAGSSLPVFQNVLLRFLDTQAPSLS--DPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLS---------------------------VTASTRPRSPVGENADEHYSK---DHDVKMEIFS----------PMPGESCENANTSLGRRMSVNCEKLVKREKPRELIFPSNYDLLRHLQYATHFPIPLDESSSHECNQRTILLYGVGKERDEARHQLKKITKDILKILNKKSTTETGVGDEGQKARKNKQETFPTLETVFTKLQLLSYFDQHQVTSQISNNVL--EQITSFASGTSYHLPLAHHIQLIFDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPDQTAQVFEGLCGVVKHVVNPSECSSPERCILAYLYDLYVSCSHLRSKFGDLFSSACSKVKQTIYNNVMPANSNLRWDPDFMMDFIENPSARSINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCS-SNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLL-----LHLFRAPQACFLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNNSVSSLKNDDFT--MRGLRCDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKE-CTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNSSNSGMSLFNPNSIGSADTSSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHL--GSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQM--MHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSE---------ENKRAYMNL-VKKLKKELGDKRSESIDKV-RQLLPLPKQTCDVITCEP---MGSLIDTKGNKIAGFDSIDKKQGLQVSTK-QKVSPWDLFEGQKNPAPLSWAWFGTVRVDRRVIKYEEQHHLLLYHTHPMPKPRSYYL 1725          
The following BLAST results are available for this feature:
BLAST of TCONS_00020096-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MD12L0.000e+029.68Mediator of RNA polymerase II transcription subuni... [more]
back to top