TCONS_00020130-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020130-protein
Unique NameTCONS_00020130-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020130-protein ID=TCONS_00020130-protein|Name=TCONS_00020130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAIVTSCTKGLFLIFNFVFWLTGLGLLVLGILSKYAFSYMLKLSSDINYN
LAPYIMIGCGVFIVLVGFIGCWAAVKEHGWALKLYMFVLVILVVVEIAGG
ITGYVMRNKLSNGLKSGLDNAVKNYYQDEDLKEAMDKVQGSVIKCCGENG
YKDYVTASGNATVGNATVGNATTVTHYKVPKSCCKDGVTDGCKYDQVITD
TTTDTGFYTDGCYSELLTKTKKNFLIVGGCALGIAVFQILGILCAWALTR
QFNSDSYQQM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011307XLOC_011307Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020130TCONS_00020130Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 10..33
score: 33.78
coord: 226..252
score: 33.1
coord: 49..75
score: 35.22
coord: 76..104
score: 30.08
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 1..260
e-value: 3.0E-49
score: 165.3
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 9..250
e-value: 9.1E-44
score: 149.8
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 104..223
e-value: 1.5E-13
score: 50.4
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 104..219
IPR018503Tetraspanin, conserved sitePROSITEPS00421TM4_1coord: 60..82
NoneNo IPR availableCDDcd03127tetraspanin_LELcoord: 104..223
e-value: 9.482E-15
score: 66.3739

Blast
[Close]
BLAST of TCONS_00020130-protein vs. Swiss-Prot (Human)
Match: TSN6 (Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.366e-40
Identity = 78/257 (30.35%), Postives = 134/257 (52.14%), Query Frame = 0 
Query:    4 VTSCTKGLFLIFNFVFWLTGLGLLVLGILSKYAFSYMLKLSSDINYNLAPYIMIGCGVFIVLVGFIGCWAAVKEHGWALKLYMFVLVILVVVEIAGGITGYVMRNKLSNGLKSGLDNAVKNYYQDEDLK-EAMDKVQGSVIKCCGENGYKDYVTASGNATVGNATVGNATTVTHYKVPKSCCK-DGVTDGCKYDQVITDTTTDTGFYTDGCYSELLTKTKKNFLIVGGCALGIAVFQILGILCAWALTRQFNSDSYQ 258
            V +C K + LI+ F+FW+TG+ LL +GI  K +      L ++   N+ P+++I  G  I+L+G  GC+A  +   W LKLY   L ++ +VE+   I G+V R+++ N  K+  + A+K Y    D +  A+DK+Q + + CCG   Y+D+   +  +  G               PKSCCK +  T     D+V            +GC+ +++T  +    +V G + G+A FQ++GI  A+ L+R   ++ Y+
Sbjct:   13 VITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV-PFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGDYRSHAVDKIQNT-LHCCGVTDYRDWTDTNYYSEKG--------------FPKSCCKLEDCTPQRDADKV----------NNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYE 243
The following BLAST results are available for this feature:
BLAST of TCONS_00020130-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN69.366e-4030.35Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1[more]
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