TCONS_00020336-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020336-protein
Unique NameTCONS_00020336-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020336-protein ID=TCONS_00020336-protein|Name=TCONS_00020336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
NFTSFKKKDEPKSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNR
PEHSFDAHDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYP
HDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPI
ITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDR
EASRLELLDKTRGQNSLPTSIKVDSKAGHVQETEEEWDTRSKAQYAEYLE
MEKKLLIEMGLLVESME
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011421XLOC_011421Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020336TCONS_00020336Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 92..131
e-value: 2.2
score: 14.9
coord: 48..87
e-value: 0.82
score: 17.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 15..230
e-value: 5.1E-17
score: 61.3
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 18..180

Blast
[Close]
BLAST of TCONS_00020336-protein vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 6.521e-72
Identity = 113/255 (44.31%), Postives = 162/255 (63.53%), Query Frame = 0 
Query:   12 KSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRPEHSFDAHDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYPHDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLD---KTRGQNSLPTSIKV-DSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLIEMGLL 262
            K +D+  +KF+V TE+GEVIY DWK  KD +TG+++S +P      HD T++T+Q+SPF   I LTVGGW  +IWK+GV  GPL+QS     + TSG WS +RP VF+IG+ DG ID+WDLL+K+HEP  +QN+    I  + P+  S KQQ +A  D  GTLH++E+PW L   +TNE+ +  HY +RE   LE ++   K R Q      +++   K    Q+++E+     K  Y  YLE+EK +LI +GL+
Sbjct:  625 KPIDDFCTKFFVGTEEGEVIYTDWKMEKDPETGRLMSKKPVSHHTIHDGTVHTIQRSPFYNDIILTVGGWNVAIWKEGVMTGPLLQSCCAPKRYTSGHWSLTRPGVFYIGREDGYIDIWDLLEKTHEPAQSQNICITMITYIKPWIFSSKQQFIATADYYGTLHILEIPWTLSRPSTNEMASVNHYFEREVKHLEYVEQRKKIREQEKKEMELEMAKKKVKTYQKSKEQMQAELKMDYESYLELEKTVLINLGLI 879
The following BLAST results are available for this feature:
BLAST of TCONS_00020336-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR636.521e-7244.31WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
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