TCONS_00020437-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020437-protein
Unique NameTCONS_00020437-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020437-protein ID=TCONS_00020437-protein|Name=TCONS_00020437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=800bp
MSSGKILPRMNKRRQRRKLTNLQSDERLVLNVGGYRHEIMSSTISTSPDT
RLYWTTQKRSQSPDYDATTGEFYFDRNPIWFPYILNYYRLGKVHCPVDVC
GAQFEEELQYWGIEERFIDSCCWDRYNKHKEANLKLSSTNEDVVDEVEQQ
SMLSDIESQFIEHERFQTFIDPLGDTEQWMFVSLFEKIKRKYKSTIWNIL
EEPNSCKTAKLIAAISLIFIVLSVTTFCLETLPRFRNQDSQQYKIIAIIE
AICATWFTIEYVLRLMTCPNKLKFMKNIMNWIDLCAVLPFFISIALPDRV
KSIVVLRVVRLIRVIRVLKLSRHSFGLQILGHTLKASCRELCLLVFFLSI
GVIIFSSLIYYAEKDVLNTKFTSIPTSFWWSIVTMTTIGYGDVVPQTLGG
KVIGTLCALCGVLVVALPVPVVVSNFSLYYSHAQSKLRFTEKNTRANENK
DHVSYFNTWFNNPGVTHRSSMVSNASRNSWYMATSHPASPLKPTTPQLCY
EHFSPGLSTCTWRSSLPNSPFFGSDMEQFKNRERKLSMPGINERRGSSDT
REDGTDRGRKSGNALKIPGSRSNNAELFDFSKDKLQKRLNISSNMYGSQY
LTPNSYHSSATATPSSSNSYWENPLSSTSGYSEQLTSSTTVSPNSTTHSS
KATPNIIAMQNNAYNHLRRSSVYTEEHFSTPRSNGSYRETWSKKVNTKNL
EEVSKRLETYLKSCDPERTSFQLSSIENSSLCARRKARKSKDETSNDLVI
PIFTIDGPSDSSRESCSLKDEEMSCTIIPVSPKVVYHKNSPLFSFESTAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011480XLOC_011480Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020437TCONS_00020437Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 87..102
score: 72.22
coord: 105..126
score: 51.52
coord: 200..212
score: 38.03
coord: 72..85
score: 53.17
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 411..422
score: 71.6
coord: 71..81
score: 56.29
coord: 316..324
score: 71.76
coord: 340..354
score: 57.28
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 311..337
score: 64.57
coord: 371..393
score: 68.71
coord: 340..363
score: 59.49
coord: 203..231
score: 41.95
coord: 274..294
score: 45.16
coord: 71..90
score: 51.75
coord: 248..271
score: 44.03
coord: 400..426
score: 63.57
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 26..129
e-value: 6.2E-4
score: 29.1
NoneNo IPR availableGENE3D1.20.5.110coord: 392..428
e-value: 2.0E-13
score: 49.2
NoneNo IPR availableGENE3D1.10.287.70coord: 340..390
e-value: 2.0E-19
score: 69.0
NoneNo IPR availableGENE3D3.30.710.10coord: 22..138
e-value: 5.2E-27
score: 93.8
NoneNo IPR availableGENE3D1.20.120.350coord: 206..339
e-value: 7.4E-35
score: 119.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 532..573
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 605..654
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 209..427
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 29..121
e-value: 5.9E-26
score: 90.5
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 212..433
e-value: 2.6E-47
score: 161.0
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 25..128

Blast
[Close]
BLAST of TCONS_00020437-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 5.686e-116
Identity = 188/450 (41.78%), Postives = 270/450 (60.00%), Query Frame = 0 
Query:   26 ERLVLNVGGYRHEIMSSTISTSPDTRLYWTTQKRSQSP-DYDATTGEFYFDRNPIWFPYILNYYRLGKVHCPVDVCGAQFEEELQYWGIEERFIDSCCWDRYNKHKEANLKLSSTNEDVVDEVEQQSML------SDIESQFIEHERFQTFIDPLGDTEQWMFVSLFEKIKRKYKSTIWNILEEPNSCKTAKLIAAISLIFIVLSVTTFCLETLPRF------------RNQDSQQY-------KIIAIIEAICATWFTIEYVLRLMTCPNKLKFMKNIMNWIDLCAVLPFFISIALPD----RVKSIV-VLRVVRLIRVIRVLKLSRHSFGLQILGHTLKASCRELCLLVFFLSIGVIIFSSLIYYAEKDVL---------NTKFTSIPTSFWWSIVTMTTIGYGDVVPQTLGGKVIGTLCALCGVLVVALPVPVVVSNFSLYYSHAQS 435
            ER+V+NVGG RH+   ST+ T P TRL W  +  + S  DYD    EF+FDR+P  F +ILNYYR GK+HCP DVCG  +EEEL +WGI+E  ++ CCW  Y +H++A   L S     +D     +         D E +    +R      P G    +          R+++  IW + E+P S + A+ +A  SL FI++S+TTFCLET  RF            RN    +Y         +  IE +C  WFT E+++R++ CPNK++F+KN +N ID  A+LPF++ + L        K ++  LRVVR +R++R+ KL+RH  GL++LGHTL+AS  E  LL+ FL++GV+IF+++IYYAE+            +T F +IP  FWW++VTMTT+GYGD+ PQT  G ++G LCAL GVL +A+PVPV+V+NF +YYS A +
Sbjct:    8 ERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFW---------RRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00020437-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC15.686e-11641.78Potassium voltage-gated channel subfamily C member... [more]
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