TCONS_00020511-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020511-protein
Unique NameTCONS_00020511-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020511-protein ID=TCONS_00020511-protein|Name=TCONS_00020511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MAKQGCVTVSCVKTWFLVFTAVLLLFAIGIFGFGVWFLVTQNHYEPILGS
MTYITTLGLMLAAGLFSMFVCIFGIIGAVRESRFMVLGFFLMIIIVCLLE
IVGGILAYVYRKDVQEEITRNLNIEMVSNYGKPGNEKKTDAIDMLQKSYQ
CCGDADYQVWKRTEWHKQDPPKTKPNVPDDQQMKVPDSCCITADQKDCGH
RIHPSNIWRNDLKPIGCIPQLIGFLENHLIKIGIACLVSGLAQIICIVLS
MWLYRLIVEFR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011512XLOC_011512Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020511TCONS_00020511Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 53..79
score: 23.8
coord: 231..257
score: 25.14
coord: 80..108
score: 26.85
coord: 14..37
score: 21.99
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 2..259
e-value: 2.0E-41
score: 139.7
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 12..255
e-value: 1.0E-40
score: 139.8
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 108..229
e-value: 3.8E-13
score: 49.1
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 108..229

Blast
[Close]
BLAST of TCONS_00020511-protein vs. Swiss-Prot (Human)
Match: TSN11 (Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.239e-35
Identity = 71/242 (29.34%), Postives = 129/242 (53.31%), Query Frame = 0 
Query:   12 VKTWFLVFTAVLLLFAIGIFGFGVWFLVTQNHYEPILGSMTYITTLGLMLAAGLFSMFVCIFGIIGAVRESRFMVLGFFLMIIIVCLLEIVGGILAYVYRKDVQEEITRNLNIEMVSNYGKPGNEKKTDAIDMLQKSYQCCGDADYQVWKRTEWHKQDPPKTKPNVPDDQQMKVPDSCCITADQKDCGHRIHPSNIWRNDLKPIGCIPQLIGFLENHL-----IKIGIACL-VSGLAQIICI 247
            +K    VF     +    +   G+W LV ++ Y  +L S T+  +  +++ AG+  M     G    + E +  +  +F +++++ L+E+V G+LA+VY + + +E+ ++LN  +  NYG+PG  + T ++D LQ+ ++CCG      W+ +         T   + + +  +VPDSCC T   + CG R HPSNI++ +    GC+ +L  FL +HL     + IG+ACL + G+    C+
Sbjct:   16 LKYLLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASSTFAASAYILIFAGVLVMVTGFLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHS---------TYILLREAEGRQVPDSCCKTVVVR-CGQRAHPSNIYKVE---GGCLTKLEQFLADHLLLMGAVGIGVACLQICGMVLTCCL 244
The following BLAST results are available for this feature:
BLAST of TCONS_00020511-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN111.239e-3529.34Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=... [more]
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