TCONS_00021388-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021388-protein
Unique NameTCONS_00021388-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021388-protein ID=TCONS_00021388-protein|Name=TCONS_00021388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MDSYLDIPRVAWEADHEWHARRSFLESNQEFFSGDKLASLSMAWSNWIFM
GCNYGEQVQATLEDCHARLPPEVDENIKKLLDAATPKVKFVKASGSGEDL
GTRTGPPQGGKRKLNTPQEHYSKYFKKDTTESENTTTTTTTNIDVNHPNH
IRGLKIYLPSKEMENQIAGESGNYILSTIGAVNESCQKCKKINEYVEEMT
LDKYKCTLYVDGRMIAQSYGENKKDTKRLCAEKGLDYLKKYQEIVYKDRI
NHDKVTEIDKGNLVKESYENAPKIADDNLGSKLLKKMGWDGSSGVGKYSH
GISEPVFVESVENRVGFGHSYDDRTVRKSSVESTLLDFLRDSKQEEIKFS
KNLTKEDRALVHRLCTKYHLKHKSFGKNEDRYLLVSKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011973XLOC_011973Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021388TCONS_00021388Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
IPR001374R3H_dom
IPR021859XTBD
IPR014720dsRBD_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000467G-patch domainSMARTSM00443G-patch_5coord: 274..320
e-value: 6.6E-9
score: 45.6
IPR000467G-patch domainPFAMPF01585G-patchcoord: 277..319
e-value: 4.9E-12
score: 45.4
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 276..322
score: 14.066
IPR001374R3H domainSMARTSM00393R3H_4coord: 312..388
e-value: 2.2E-8
score: 43.8
IPR001374R3H domainPFAMPF01424R3Hcoord: 330..387
e-value: 1.9E-11
score: 43.7
IPR001374R3H domainGENE3D3.30.1370.50coord: 322..388
e-value: 9.5E-14
score: 50.5
IPR001374R3H domainPROSITEPS51061R3Hcoord: 325..388
score: 15.3
IPR001374R3H domainSUPERFAMILY82708R3H domaincoord: 330..387
IPR021859XRN-Two Binding Domain, XTBDPFAMPF11952XTBDcoord: 9..75
e-value: 1.3E-16
score: 60.0
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 191..238
e-value: 4.4E-5
score: 24.0
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 203..240
score: 9.076
NoneNo IPR availableGENE3D3.30.160.20coord: 122..254
e-value: 8.1E-8
score: 31.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..119
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 175..241

Blast
[Close]
BLAST of TCONS_00021388-protein vs. Swiss-Prot (Human)
Match: NKRF (NF-kappa-B-repressing factor OS=Homo sapiens GN=NKRF PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.054e-20
Identity = 66/220 (30.00%), Postives = 115/220 (52.27%), Query Frame = 0 
Query:  179 IGAVNESCQKCKKINEYV-EEMTLDKYKCTLYVDGRMIAQSYGENKKDTKRLCAEKGLDYLKKYQEIV--------YKDRINHDKVTEIDKGNLVKESYENAPKIADDNLGSKLLKKMGWDGSSGVGKYSHGISEPVFVESVENRVGFGHSYDD-RTVRKSSVESTLLDFLRDSKQEEIKFSKNLTKEDRALVHRLCTKYHLKHKSFGKNEDRYLLVSKQ 388
            +  +N++ Q  +   EYV E MT  ++KC + ++  +IA++ G  KK  K   A + +  LKK Q  V         +D I+ +++    +G   +E+Y+   +I +DN+G++LL+KMGW G          I EP+ V+    R G G   +    + K  +E  + ++ R     ++ FS+ LT ++R  +H++  KY LK KS G   DRYL+V ++
Sbjct:  452 VCTLNDTAQFNRMTVEYVYERMTGLRWKCKVILESEVIAEAVGV-KKTVKYEAAGEAVKTLKKTQPTVINNLKKGAVEDVISRNEI----QGRSAEEAYKQ--QIKEDNIGNQLLRKMGWTGGGLGKSGEG-IREPISVKEQHKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTFSRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVVGRK 663
The following BLAST results are available for this feature:
BLAST of TCONS_00021388-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKRF4.054e-2030.00NF-kappa-B-repressing factor OS=Homo sapiens GN=NK... [more]
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