TCONS_00021389-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021389-protein
Unique NameTCONS_00021389-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021389-protein ID=TCONS_00021389-protein|Name=TCONS_00021389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MXLNRFLLIMAASSTDNKFSISWHDSAWIPILNSENVLDYFCQRSNTFYD
KTCNNEQVKMQRLEPTQLDYMTGVEYRLIHGQDPILYVIRKQMRHSPNQT
THLALYYILAGIVYQAPDVGSMINSRLLSSIHKLQSAFEEAQSYSHYNPS
KGYWWVFKDGENDKPKAPPKKNKAHEVSSHFQRQRVDMLLANFAQNFPPK
MVQEKEKNDNSESTEGDCSKSKETKMDSDTPDIKIEAAEPMETNGNDDKN
AVTQPPSKRKKRE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011974XLOC_011974Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021389TCONS_00021389Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016820Mediator_Med6_met/pln
IPR007018Mediator_Med6
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016820Mediator complex, subunit Med6, metazoa/plantPIRSFPIRSF023869MED6_meta/plantcoord: 7..262
e-value: 1.8E-83
score: 277.5
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 21..148
e-value: 1.9E-42
score: 144.1

Blast
[Close]
BLAST of TCONS_00021389-protein vs. Swiss-Prot (Human)
Match: MED6 (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.875e-85
Identity = 124/218 (56.88%), Postives = 154/218 (70.64%), Query Frame = 0 
Query:    9 IMAASSTDNKFSISWHDSAWIPILNSENVLDYFCQRSNTFYDKTCNNEQVKMQRLEPTQLDYMTGVEYRLIHGQDPILYVIRKQMRHSPNQTTHLALYYILAGIVYQAPDVGSMINSRLLSSIHKLQSAFEEAQSYSHYNPSKGYWWVFKDGENDKPKAPPKKNKAHEVSSHFQRQRVDMLLANFAQNFPPKMVQEK--EKNDNSESTEGDCSKSKET 224
            + A    DN   ISW DS+WIPILNS +VLDYF +RSN FYD+TCNNE VKMQRL    L+ M G+EY L+H Q+PIL++IRKQ R SP Q   LA YYI+AG++YQAPD+GS+INSR+L+++H +QSAF+EA SY  Y+PSKGYWW FKD E ++ K  PK  +  E SS FQRQRVD LL +  Q FPPK VQ K  EK    + T+ +     ET
Sbjct:    1 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHE-EQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPET 217
The following BLAST results are available for this feature:
BLAST of TCONS_00021389-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED65.875e-8556.88Mediator of RNA polymerase II transcription subuni... [more]
back to top