TCONS_00021395-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021395-protein
Unique NameTCONS_00021395-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021395-protein ID=TCONS_00021395-protein|Name=TCONS_00021395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MSMDVALGYFEDDDAVEYDLTKPPMSGIDYIKRVQAEAALCPDVVIAEQP
KSSALLESKKSPAKKRDPLNRTRVFPTEERQFKVAEDFAFLRQKFNRVKT
DPSSLCRLSKAVLPPVGSQQSWGRFCYGKDFTGTYFDFCLKGESGQLLNE
GTKGQGSAPLLSVLLKLKQPMVVKLLKYNFLFLNVVGFSYDQSVWIHSLL
VCLDKPLPSDASSTIRDLCRRVMEIRNQLTEPINDNILHQLNLIIILITR
YFGQVDLLEESHINDTYYKSCLRSKEREAFRRLEEKEEINEEEPI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011980XLOC_011980Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021395TCONS_00021395Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017364GEMIN2
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000245spliceosomal complex assembly
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000245 spliceosomal complex assembly
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF04938SIP1coord: 16..254
e-value: 3.2E-45
score: 154.4
IPR017364Gem-associated protein 2PIRSFPIRSF038038Gemin-2coord: 1..261
e-value: 5.0E-39
score: 132.2

Blast
[Close]
BLAST of TCONS_00021395-protein vs. Swiss-Prot (Human)
Match: GEMI2 (Gem-associated protein 2 OS=Homo sapiens GN=GEMIN2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-29
Identity = 80/248 (32.26%), Postives = 123/248 (49.60%), Query Frame = 0 
Query:   18 YDLTKPPMSGIDYIKRVQAEAALCPDVVIAE-QPKSSALLESKKSPAKKRDPLNRTRVFPTEERQFKVAEDFAFLRQKFNRVKTDPSSLCRLSKAVLPPVGSQQSWGRFCYGKDFTGTYFDFCLKGESGQLLNEGTKGQ----GSAPLLSVLLKLKQPMVVKLLKYNFLFLNVVGFSYDQSVWIHSLLVCLDKPLPSDASSTIRDLCRRVMEIRNQLTEPINDNILHQLNLIIILITRYFGQVDLLEE 260
            +D + PP +  +Y++RVQ EAA CPDVV+A+  PK     +S         P       PT + Q +    F+ +RQ  N+ ++   S    S   +P    ++ W +FC G+         C  G  G   NE         G  PLLS++ ++ Q  V  +L+Y   +     F+ +   W+++LL CL+KPL  +A S IR L RR  E+R  L +  +D  +  LNL+I L++RYF Q DL +E
Sbjct:   40 FDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEG-YSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKL-------CADGAVGPATNESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVR-LLVDSKDDERVPALNLLICLVSRYFDQRDLADE 278
The following BLAST results are available for this feature:
BLAST of TCONS_00021395-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GEMI21.415e-2932.26Gem-associated protein 2 OS=Homo sapiens GN=GEMIN2... [more]
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