TCONS_00021865-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021865-protein
Unique Name	TCONS_00021865-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	935

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021865-protein ID=TCONS_00021865-protein|Name=TCONS_00021865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=935bp
MGKAKKRKTADFHKTKLKVGKRKPVGTNVTNTTFKTSSINITSQLEESTD
PKTKRNLSRKDLLSQLNHYNATIRHEACLGFRDLFQSHPEIMHEQINSWI
PKLLDKMTDTDAAVRHSFTLCMQHVSRNLPIHEISPFIHIIVAHLCCGMT
HINEAVQLDSLSILELILDYFPRLMVSYSHKILPSLIDLMSKQGKRETNS
SQSLNTSKVKGISSLVSRDVSFNVEGKMSSLKARTKVLSKLQKVLFVLFD
NDEKTNDRNDNWDSDQTVYVTGQPVYSRLNNHRKFNLIGHERTREDWLQI
ASDQNQGQDHYAVDFFYQIYPVLLNSWIEYEPGQLASGLNDSSSIRASLP
GMTNVIGILNIFVTLSRNNKGFQLFENEASFKEFCTHFLKSFALPLTFTK
MKSIAKQETTNDIQRFAMDFNFVMAKTICQLFSKSAMLTDGKLRARYLKQ
LMVFCSDVLENSGLLSKEKILAFMDVFEEVMKLKRSLKSKEGSYIDCNHI
IQTMIQCYSRGSVTSPWKIPLLQFFQKLCFEKDSNWLGADMLDHLESIIT
IVIKNVWSLPSSALGLIRSSLVFIKVVSVCQFCQEASMQEELQKTLIKMT
DITNGFYHRLDEQTFQKVIELLHSLKNLPTQLLKNATMLCFQSDVTLRNK
KYLMSVVALGLQKEEPSLAIEDFINFIFTITINYTMASLTKSTSEQESTA
VKWSILNLYDDQKKDALSEYAIEQLQVLENISCLYQKMLIPVGKILAMFR
HLPISSAYGIIKLVSRLTTWSNEDDRKLEGESQKIETLTINCEINQIADL
VSAVLLYTISGTYKSLIQTTQRPPSLEKTNDCYHDALVFDLMTSAVNLLA
NNELVLRQLVKKWINIVREYDMDANCIISIAEVLLALLQEPLLNGPLREL
KSELNSITNIQMNAATRTDATVLKQLRFVIKEYWQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012269	XLOC_012269	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021865	TCONS_00021865	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024679	IPI1/TEX10
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024679	Pre-rRNA-processing protein IPI1/Testis-expressed sequence 10 protein	PFAM	PF12333	Ipi1_N	coord: 133..245 e-value: 2.5E-18 score: 66.4
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 53..865 e-value: 2.7E-18 score: 65.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 381..561 coord: 62..207

Blast

[Close]

BLAST of TCONS_00021865-protein vs. Swiss-Prot (Human)
Match: TEX10 (Testis-expressed protein 10 OS=Homo sapiens GN=TEX10 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.078e-38
Identity = 171/730 (23.42%), Postives = 328/730 (44.93%), Query Frame = 0

Query:    5 KKRKTADFHKTKLKVGKRKPVGTNVTNTTFKTSSINITSQL-EESTDPKTKRNLSRKDLLSQLNHYNATIRHEACLGFRDLFQSHPEIMHEQINSWIPKLLDKMTDTDAAVRHSFTLCMQHVSRNLPIHEISPFIHIIVAHLCCGMTHINEAVQLDSLSILELILDYFPRLMVSYSHKILPSLIDLMSKQGKRETNSSQSLNTSKVKGISSLVSRD------VSFNVEGKMSSLKARTKVLSKLQKVLFVLFDNDEKTNDRNDNWDSDQTVYVTGQPVYSRLNNHRKFNLIGHERTREDWLQIASDQNQGQDHYAV-----------------DFFYQIYPVLLNSWIEYEPGQLASGLNDSSSIRASLPGMTNVIGILNIFVTLSRNNKGFQLFEN---EASFKEFCTHFLKSFALPLTFTKMKSIAKQETTNDIQRFA--------MDFNFVMAKTICQLFSKSAMLTDGKLRARYLKQLMVFCSDVLENSGLLSKEKILAFMDVFEEVMKLKRSLKSKEGSYIDCNHIIQTMIQCYSRGSVTSPWKIPLLQFFQKLCFEKDSNWLGADMLDHLESIITIVIKNVWSLPSSALGLIRSSLV--FIKVVSVCQFCQEASMQEELQKTLIKMTDITNGFYHRLDEQTFQKVIELLHSLKNLPTQLLKNATMLCFQSDVTLRNKKYLMSVVAL-------GLQKEEPSLAIEDFINFIFTITINYTMASLT 690
            K+++  DF K KLKVGK+KP   N T T FKT +I++  QL E+ T P   R L+ KDLLSQ++HYNA ++  A LG +DL   +P I+   +++ + ++    TD DA VR +    +Q ++  +   +ISPF  ++ AHL   MTHI E +Q DSL +L+++L+ +P L+   S  +L + ++L+S Q             SK      L++RD      +S N   +++S + R KVL +L K L  L D   +  +     +  +  + T   ++     H   N   H +  E+     +  +Q +  Y V                  F   I P+L+  W+E  P QLA+ + +    R  L  M  V+ I+++   LS+        E+   +    +F  HF+  F  P    ++    ++E    I+           +  N  ++  +  L + S +  D      +++ +  F ++ LE+   L+ +++   + V   +M+++    ++E    D   +I+ +   Y +  +  P +  LL+FF K+   ++   L +    +   +++  +  +  L  + LG     L    I ++          + + LQ T +++ D   G    L   + Q++++L++ L +LP  LL   +  C    ++      L+ ++ +           ++  ++  D+ +F+F+    ++   LT
Sbjct:    4 KRKRQHDFQKVKLKVGKKKPKLQNATPTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQ-----------QLSK-----GLINRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHA--NDQQHIQVYENGGSQPNVSSQFRLRYLVGGLSGVDEGLSSTENLKGFIEIIIPLLIECWVEAVPPQLATPVGNGIE-REPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF--PYVLKEITKHKRKEPNKSIKHCTVLSNNIDHLLLNLTLSDIMVSLANASTLQKD----CSWIEMIRKFVTETLEDGSRLNSKQLNRLLGVSWRLMQIQ---PNRE----DTETLIKAVYTLYQQRGLILPVRTLLLKFFSKIYQTEE---LRSCRFRYRSKVLSRWLAGL-PLQLAHLGSRNPELSTQLIDIIHTAAARANKELLKSLQATALRIYDPQEGAVVVLPADSQQRLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKYSAKDWLMSDVDYFSFLFSTLTGFSKEELT 697

The following BLAST results are available for this feature:

BLAST of TCONS_00021865-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TEX10	1.078e-38	23.42	Testis-expressed protein 10 OS=Homo sapiens GN=TEX...	[more]

You are here

TCONS_00021865-protein (polypeptide) - C. hemisphaerica