TCONS_00021987-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021987-protein
Unique NameTCONS_00021987-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021987-protein ID=TCONS_00021987-protein|Name=TCONS_00021987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=878bp
LKEKIYGINMSDNNSAWEEGHRRETRKSYQAYIEEITGVGDTNPETSAGA
TEEDDASNKRRSKRTPIPKRNFKLIDNYQDSSSKEPSKKKDRKSKGRKSV
DAADNIKTEPVNDDQPALPPSEEAPEPQQSERKSSKKSVSWSVKEEQVEQ
ELAAASSEPSEQVFLELPADPTEGVDDEEEEAAPRKSGRVRKPKEFKDSI
TPSYVKKSVERSKKTNPDAEADNPPDPPQLQPAEKKSQSRKRKASDSSEK
KPVPLSVFDQEVAQLLATDQIKEEPLTDSQNEDESGAPSKKSRRRRTAST
SANDEATVSPAKRNTKVEDANDSATPVKRGASIKLKIKPMAERLAEEPVK
ETPKASKKKSNETSSSSARKKAEAASNKKRRSGSSGGKLIVSFKKKTSER
RQQATTDEDTANDKDTSLLTDKLLPTPQVDVKTEDPSEEPSSSKKKKSPS
NKKKKKKEKKKKLDNDSQKLIEVKMFEEVEDQSIVKVKKKKVYKKRKGSK
VLVRIIKNHCNRGGEIVKTEVVAVDSVPVSDGEKANDSLTQGVGEDSMMI
DDDDEIADDEDEDDEEMTLINQGINPKDEEWVPEDEKPSTSSRTKRIKKP
PPSKDIPAEKKKTKTSAAMTDKKKTSTKGSSRKGGKNVTIGGKVVGKTTK
GMKTTGESKDLTIKKSKKPCPCCTGKLLKISESSNNVVYNTASSEPKNAY
NLFCRKYRPIIVHNHPRADFAEISRRLAHIWNKASAEDRAGYFEVFSKME
CAFRKKLEYLGRRSPSSWTIQEFEYVKKAISYDLPFQQQTYSETKLQPVD
MAAHLQVLGESLNTMGQTLQQQSSTTVNGALSLMLDSMLCALGPLIYMTS
FVPQMKSIEPKDMAKTMDNIGYIMPGNG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012341XLOC_012341Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021987TCONS_00021987Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 453..473
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..468
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 529..656
NoneNo IPR availableCDDcd00084HMG-boxcoord: 696..744
e-value: 3.5821E-8
score: 50.6951
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 692..762
e-value: 6.0E-5
score: 32.4
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 696..755
e-value: 2.0E-10
score: 40.8
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 690..800
e-value: 1.9E-12
score: 46.8
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 693..760
score: 11.109
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 695..757

Blast
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BLAST of TCONS_00021987-protein vs. Swiss-Prot (Human)
Match: HMGX4 (HMG domain-containing protein 4 OS=Homo sapiens GN=HMGXB4 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.193e-29
Identity = 71/201 (35.32%), Postives = 112/201 (55.72%), Query Frame = 0 
Query:  698 NAYNLFCRKYRPIIVHNHPRADFAEISRRLAHIWNKASAEDR------AGYFEV-------------FSKMECAFRKKLEYLGRRSPSSWTIQEFEYVKKA--ISYDLPFQQQTYSETKLQPVDMAAHLQVLGESLNTMGQTLQQ-QSSTTVNGALSLMLDSMLCALGPLIYMTSFVPQMKSIEPKDMAKTMDNIGYIMPG 876
            +AY +FC++YR  IV +HP  DF E+S++LA +W +   +D+      A Y +               S  E + + K   +G  SP           KK+   +  LP       ET  +P+D+AAHLQ+LGESL+ +G  LQ+ +    V+G+LS++LDS++CALGPL  +T+ +P++     + ++ T+DNI YIMPG
Sbjct:  412 SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQ----------KKSPPTTMLLPASPAKAPET--EPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG 600
The following BLAST results are available for this feature:
BLAST of TCONS_00021987-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMGX41.193e-2935.32HMG domain-containing protein 4 OS=Homo sapiens GN... [more]
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