TCONS_00022098-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022098-protein
Unique Name	TCONS_00022098-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	554

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022098-protein ID=TCONS_00022098-protein|Name=TCONS_00022098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MFTKTRGKINMAGTRRKRKKITRPTRRKASSKKIKTDKDEHVQSEDETPI
QEVEEKINNNEDEEEDFEEFSTNDYQLSELELLRKENMKKNFQLFEEFQI
NKVKDEVKELARPKLNVVGIKREKREKPPKEILPRRVSLRIRKLEAHDSI
NIEDYVPLSTFQNYQKQQQHNYHERKEETVKMTKEDDESNYSEIIQTWLE
EKPGTVKQEASEVEFSNYSKEINSLFVSNCGKVTKSRICSIAIHPSESKT
IAAFGDKQGAVGIWDVGSNAQCKGYPASEEVLVFEPHSSPINCLKFRTDD
CTKLMSCSYDGTLRQGDFAKQKFTQVFAFDDSDNRCYSFSNPLNKPNIFL
LSTSEGSVALIDSVSGKAEMESFILQKNVKCIDCHPSNEYIFAAVGHDGT
MGTWDIRNLKTKGTSNPIFVVKSFKTGSGLYFSPGTGNKLAYTSNDDTVR
IFDVKKSGEFSKSASWTLKHDNHTGRWLTPFRATWDPKTENCFVIGSMGH
PRKLDVYSCVGPGRLEWIPLRDDNFGTVGSVNAFHPTKNILISGNSSGKA
HVWS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012393	XLOC_012393	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022098	TCONS_00022098	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 414..453 e-value: 6.0 score: 12.1 coord: 516..554 e-value: 31.0 score: 7.6 coord: 224..265 e-value: 56.0 score: 6.0 coord: 277..317 e-value: 0.0018 score: 27.5 coord: 365..405 e-value: 3.8 score: 13.4
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 281..314 e-value: 0.028 score: 15.2
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 195..405 e-value: 3.1E-22 score: 78.4
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 406..554 e-value: 1.1E-12 score: 47.3
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 284..462 score: 9.705
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 230..554

Blast

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BLAST of TCONS_00022098-protein vs. Swiss-Prot (Human)
Match: WDR76 (WD repeat-containing protein 76 OS=Homo sapiens GN=WDR76 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 5.182e-60
Identity = 161/572 (28.15%), Postives = 262/572 (45.80%), Query Frame = 0

Query:   19 KKITRPTRRKASSKKIKTDKDE----HVQSEDETPIQEVEEK-----INNNEDEEEDFEEFSTNDYQ-LSELELLRKENMKKNFQLFEEFQINKVKDEVKELARPKL------------NVVGIKREKREKPPKEILPRRVSLRIRKLEAHDSINIEDYVPLSTFQNYQKQQQHNYHERKEETVKMTKEDDESN---YSEIIQTWL-EEKPGTVKQEASEVEFSNYSKEINSLFVS--NCGKVTKSRICSIAIHPSESKTIAAFGDKQGAVGIWDVGSNAQCKGYPASEEVLVFEPHSSPINCLKFRTDDCTKLMSCSYDGTLRQGDFAKQKFTQVFAFDDSDNRCYSFSNPLNKPNIFLLSTSEGSVALIDSVSGKAEMESFILQK--NVKCIDCHPSNEYIFAAVGHDGTMGTWDIRNLKTKGTSNPIFVVKSFKTGSGLYFSPGTGNKLAYTSNDDTVRIFDVKKSGEFSKSASW--TLKHDNHTGRWLTPFRATWDPKTENCFVIGSMGHPRKLDVYSCVGPGRLEWIPLRDDNFG-----TVGSVNAFHPTKNILISGNSSGKAHVW 553
            ++I  P  +  SSK   T ++     H +S    P +  +       + +++D + D +   + D+  LS  E  R +N+ +N   F   Q+++    ++E+   +             N +G +R  R     ++ P  VSL            + D  PL                     ++MT E+ E N   +   + TW    KP +   E       +Y   +N + +S     KVT   I S+A+HPSE++T+ A G K G VG+ D+         P  + V VF PHS P++CL F   +   ++S SYDGTLR GDF++  F +V+  + S    + F       +  ++   +G+++L+D  +     E         ++ +  HP +   F   G   T   +D R L ++ +   I + +  K+ +  YFSP TGN++  T  D  +RIFD   S   S       T++H+  TGRWLT F+A WDPK E+C ++GSM HPR+++++   G         R  +FG     +V S+NA HPT+ IL  GNSSGK HV+
Sbjct:   91 RRIIPPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLL---KVDPSGVSL---PAAPTPPTLVADETPL----------------LPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQ------PKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFL--AEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTH-IYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFD---SSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGK--------RVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVF 620

The following BLAST results are available for this feature:

BLAST of TCONS_00022098-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022098-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR76	5.182e-60	28.15	WD repeat-containing protein 76 OS=Homo sapiens GN...	[more]

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TCONS_00022098-protein (polypeptide) - C. hemisphaerica