TCONS_00022295-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022295-protein
Unique NameTCONS_00022295-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022295-protein ID=TCONS_00022295-protein|Name=TCONS_00022295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=734bp
MLHVFLVDTGIMLKFDMELAVESVGYLMEAVHQRVFIPANKQVLLSASGE
PLSPSNRVASYASCGTETQPIYLFSKSTIESPIPPSPSINLGSVESLMTE
VETCLKMKPKYETLVARAQLAADFQRLAVEIGENCENLVGDQFLQKSGWK
AVVLNLDQITSAFEQHVQVFEEYYENFFTAKLQYSEMIQKFECVLMLLKK
LPLLNSILRTDEQPITLLQWISTHDEQSSIENMVRQVHEALNKCSEDALH
GMVDEAHKVLDSVNNEGMKEIKGLNERLESLQQRLLLVKQLVQDQTDMAQ
GFQQNKMRAEHVGDPSVLPDLCASHQKQLTVLRKNHYKIRDIRNLCARAK
DELSTNLHARLRWVMFIEKSIFECDSRLLVYHESLKRIKKRLDIFEQVYE
APKMYILAVLEVLRRKSFSAQFLEWSKSVSESAINARTEELRKREMFTTV
FGNHFVKNLFPGLDRQPLPFAEDPPVSCDEHLPDISVDDIRLLQETAPEL
MSELHLGDMESSLVIQTCLSQSSLTKFVDPRSNKTLEETVNFREKAHVDN
NQLTMSVLHREISRGDVVDLSFPGSVQFQVGSASSQDDDVIDGAATFEAG
SLSSLSKEKMLVGSSDSEALMFHSAELDFTSPSPGVSSPIIASPSSVRSS
SGKSSSGKSSSSPIAIKTSSSGKNWRCSQSLSPQSVPHVVKEDVFSLPNF
ERQASRLSVTDDKNSSQNSCRSLSEAIRXRLVYL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012509XLOC_012509Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022295TCONS_00022295Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 264..291

Blast
BLAST of TCONS_00022295-protein vs. Swiss-Prot (Human)
Match: RBCC1 (RB1-inducible coiled-coil protein 1 OS=Homo sapiens GN=RB1CC1 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 3.592e-53
Identity = 104/285 (36.49%), Postives = 163/285 (57.19%), Query Frame = 0
Query:  215 ITLLQWISTHDEQSSIENMVRQVHEALNKCSEDALHGMVDEAHKVLDSVNNEGMKEIKGLNERLESLQQRLLLVKQLVQDQTDMAQGFQQNKMRAEHVGDPSVLPDLCASHQKQLTVLRKNHYKIRDIRNLCARAKDELSTNLHARLRWVMFIEKSIFECDSRLLVYHESLKRIKKRLDIFEQVYEAPKMYILAVLEVLRRKSFSAQFLEWSKSVSESAINARTEELRKREMFTTVFGNHFVKN-LFPGLDRQPLPFAEDPPVSCDEHLPDISVDDIRLLQETAP 498
            ++LL WI+  D  + +E++VR+  +++++     +   + E  + +  ++N+ MK IKGL +RL +L Q +    +LV +Q ++AQGF  N+ RAE++ D SVLPDLC SH  QL ++ +NH K+ DI+  C  AK EL+ NLH RL+W  F+     +   +L      +  + +R+ I E +   P+MY LAV+EV+RRK F   + EW+ ++ +        E  KRE F  +F   F++N LF GLD  P  F    P   D  LPDIS+ D++ LQ   P
Sbjct:  306 VSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIAKLDNQNMKAIKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQKRAENLKDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLERVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKLFRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCP 590          

HSP 2 Score: 125.561 bits (314), Expect = 2.307e-29
Identity = 69/209 (33.01%), Postives = 112/209 (53.59%), Query Frame = 0
Query:    2 LHVFLVDTGIMLKFDMELAVESVGYLMEAVHQRVFIPANKQVLLSASGEPLSPSNRVASYASCGTETQPIYLFSKSTIESPIPPS-PSINLGSVESLMTEVETCLKMKPKYETLVARAQLAADFQRLAVEIGENCENLVGDQFLQKSGWKAVVLNLDQITSAFEQHVQVFEEYYENFFTAKLQYSEMIQKFECVLMLLKKLPLLNSILR 209
            L+VFLV+TG  L FD EL V++V  L  A+  +  I    QVL+   GE ++   RV +Y S GT+T PI+LF+K  I    PP+ P     +   +  +VE  L M   + T+ +R QLA +   +A ++   CE LV D+ LQ  GW A++ NL+  ++++++ +  FE  Y N+  +       +      + ++ K+PLL  + R
Sbjct:    3 LYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTY-SAGTDTNPIFLFNKEMILCDRPPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQLALEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTR 210          
The following BLAST results are available for this feature:
BLAST of TCONS_00022295-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBCC13.592e-5336.49RB1-inducible coiled-coil protein 1 OS=Homo sapien... [more]
back to top