TCONS_00022522-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022522-protein
Unique NameTCONS_00022522-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022522-protein ID=TCONS_00022522-protein|Name=TCONS_00022522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MRSPIQAHKCGHRFCAKCIEKYHETSDGIVCPFDRQPIEIFKDIGREREI
LEMKVYCKNRPQCSWQSELRYFEDHMKECLFETIDCDMNCGIKVLRSDMR
NHLENDCLVEFPCQYQSIGCLFTGSKRSLTEHMVLSTNQHLLFQMQHEVR
KVKQDFDEKLKAKDLQLRILGERLKTVEGEIVVLRNEKKKMSAEIKTKND
KMNQLDAKLIELEDLVEDNQLKNYNKLGDMAKAIDGLKVENQKAVAKIDT
FSHPFILKIDNFDEQFKQAKTQNNIIRSRPFLCLGQYKGQLKLYLNGNSN
GIGTHISIFFCLIEGPLDDMIEWPMKWKKCTIELIINDTVIGSHILRGVN
ENFKNFKRPTFAENETGKRGPSKFVDHKDIPHIIRDDIVTIKFEIH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012629XLOC_012629Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022522TCONS_00022522Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR001841Znf_RING
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..222
NoneNo IPR availableGENE3D1.20.5.340coord: 140..267
e-value: 0.0011
score: 18.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..39
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 75..132
e-value: 2.1E-11
score: 44.3
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 75..120
score: 11.24
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..51
e-value: 5.3E-7
score: 28.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 102..133
e-value: 0.0099
score: 15.6
coord: 52..101
e-value: 1.7E-12
score: 46.9
IPR008974TRAF-likeGENE3D2.60.210.10coord: 268..396
e-value: 2.3E-15
score: 56.9
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 53..147
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 254..395
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 7..32
e-value: 1.2E-4
score: 21.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 10..19
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 10..35
score: 9.273
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 1..38
e-value: 0.00138248
score: 35.114
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 252..395
score: 10.496

Blast
[Close]
BLAST of TCONS_00022522-protein vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.070e-30
Identity = 121/505 (23.96%), Postives = 215/505 (42.57%), Query Frame = 0 
Query:   10 CGHRFCAKCIEKYHETSDGIVCPFDRQPI---EIFKDIGREREILEMKVYCKNRPQCSWQSELRYFEDHMKECLFETIDC-DMNCGIKVLRSDMRNHLENDC--------------------------LVEFP-----------------------------CQYQSIGCLFTGSKRSLTEHMVLSTNQHLLFQMQHEVRKVKQ--DFDEKLKAKDLQLRILGERLKTVEGEIVVLRNEKKKMSAEIKTKN--------------DKMNQLDAKLIELEDLVEDNQLKNYNKLGDMAKAIDGLK-----VENQK---AVAKIDTFSH----------------------------PFILKIDNFDEQFKQAKTQNNI-IRSRPFL-CLGQYKGQLKLYLNGNSNGIGTHISIFFCLIEGPLDDMIEWPMKWKKCTIELIINDTVIGSHILRGV--NENFKNFKRPTFAENETGKRGPSKFVDHKDIPHI----IRDDIVTIKFEI 395
            CGHRFC  CI    E +   +CP D++ I   E+FKD   +RE+L + VYC N P C+ +  L  ++DH+++CLF+ + C +  C   VLR D++ HL   C                            E+P                             C ++  GC  T  +R+L +H   +  +H+   ++  V+  +Q  D  + L+ K+ +++ L E +K +E E         K  A++  KN              DK   L+A++ +L  +V  NQ +N   L  + +A+D +K     +EN     AV + +T  H                              I K+ ++  + ++A   + + I S+ F      Y+   + YLNG+ +G G+H+S++F ++ G  D +++WP + +   + L++ D     +I+     + N  +FKRP    N     G  +FV H  + +     I+DD + +K  +
Sbjct:   60 CGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEF--------KQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLLQMV--NQQQNKFDLRPLMEAVDTVKQKITLLENNDQRLAVLEEETNKHDTHINIHKAQLSKNEERFKLLEGTCYNGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQR---VTLMLLDQSGKKNIMETFKPDPNSSSFKRPDGEMNIAS--GCPRFVAHSVLENAKNAYIKDDTLFLKVAV 549
The following BLAST results are available for this feature:
BLAST of TCONS_00022522-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF51.070e-3023.96TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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