TCONS_00022813-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022813-protein
Unique NameTCONS_00022813-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022813-protein ID=TCONS_00022813-protein|Name=TCONS_00022813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MLRRLLFGNPYETRTEIEGVVQEIDDNESGHNFDEVQILSGHNDIVDLII
NIDDQRILTTGQDKKGIVWDCKTGKMVCELVGHKRAITAAIIIRKYLDSI
EDFSDVIVTASSDEAIKIWDVLTGRCKRTITEHKGTVKCFSIGRSEPCVV
ITAGQDICLWDASFNLLAIFQRNSLDYIHSAIFVKTDRIVVATDQPTLVV
YNVPTLNDDDDVSQQITECKKLLPHRESVTALTLVSDAIFTSASMDGGII
IWTTHRLVATRKFNHYDNFMNITDHTYPYSVQHLMVAESHYVLAAIGCGF
AIFDARFDDSKKCIARVTNAHHSQVTALALLNKGKYLATASLDGTVRLWS
GVPLDKDVAQKEQPMLKSLLSRLFERNLSEVKRFPLPLHLVGQCYAHSNS
VKGITECGNEGFVSFDNDGLVILWKDSLKKRLGDDKAIRMVLEKLGWNKT
NS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012821XLOC_012821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022813TCONS_00022813Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 310..350
e-value: 5.5E-8
score: 42.5
coord: 216..253
e-value: 0.69
score: 18.0
coord: 32..70
e-value: 0.14
score: 21.3
coord: 387..425
e-value: 23.0
score: 8.4
coord: 123..161
e-value: 0.0031
score: 26.7
coord: 163..202
e-value: 400.0
score: 0.6
coord: 73..120
e-value: 0.011
score: 25.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 318..350
e-value: 4.4E-5
score: 24.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 318..350
score: 13.048
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 107..129
score: 9.907
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 179..434
e-value: 2.0E-21
score: 75.6
NoneNo IPR availableGENE3D1.10.10.670coord: 115..178
e-value: 4.5E-12
score: 45.2
NoneNo IPR availableGENE3D2.130.10.150coord: 21..114
e-value: 1.3E-13
score: 50.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 107..121
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 39..350
score: 17.587
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 32..351

Blast
[Close]
BLAST of TCONS_00022813-protein vs. Swiss-Prot (Human)
Match: WDR41 (WD repeat-containing protein 41 OS=Homo sapiens GN=WDR41 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.159e-40
Identity = 123/454 (27.09%), Postives = 220/454 (48.46%), Query Frame = 0 
Query:    1 MLRRLLFGNPYETRTEIEGVVQEIDDNESGHNFDEVQILSGHNDIVDLIINIDDQRILTTGQDKKGIVWDCKTGKMVCELVGHKRAITAAIIIRKYLDSIEDFSDVIVTASSDEAIKIWDVLTGRCKRTITEHKGTVKCFSIGRSEPCVVITAGQDICLWDASFNLLAIFQRNSLDYIHSAIFVKTDRIVVATDQPTLVVYNV-PTLNDDDDVSQQITECKKLLPHRESVTALTLVSDAIFTSASMDGGIIIW-TTHRLVATRKFNHYD--------NFMNITDHTYPYSVQHLMVAESHYVLAAIGCGFAIFDARFDDSKKCIARVTNAHHSQVTALALLNKGKYLATASLDGTVRLWSGVPLDKDVAQKEQPMLKSLLSRLFER----NLSEVKRFPL----------PLHLVGQCYAHSNSVKGITECGNEGFVSFDNDGLVILWKDSLKK 430
            MLR L+ G         +  +Q I + ++ + + E+ +L  H+DIV  ++ +DD R  + G D   +VW+ +TG+ + EL GH + IT AII    L+S E+ + +I+TAS+D  + +WD  T R  + I+  + TVKC ++ +    V ++ G D+C+W+   +LL      S   I + + +  + +V A  +  ++   V PT   +  +   I E K+LL H++++ +L  V+D  F + S  G +IIW      +   + N +D          + +   +   S+ H    E + V AA+G G  ++  +    K+ IA    AH S V  +A L   + L + S DG+VR+W       ++ +K+Q   + + +  F       +S+    P+           L L+G    HS+SV+      + G V+   D L+ILWK+  ++
Sbjct:    1 MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKIT-AIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLD-VWLSGGNDLCVWNRKLDLLCKTSHLSDTGISALVEIPKNCVVAAVGKELIIFRLVAPT---EGSLEWDILEVKRLLDHQDNILSLINVNDLSFVTGSHVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQKSNDISIHHFTCDEEN-VFAAVGRGLYVYSLQM---KRVIACQKTAHDSNVLHVARL-PNRQLISCSEDGSVRIW-------ELREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKKQQENATSCSLELIGDLIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERE 437
The following BLAST results are available for this feature:
BLAST of TCONS_00022813-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR411.159e-4027.09WD repeat-containing protein 41 OS=Homo sapiens GN... [more]
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