TCONS_00023296-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023296-protein
Unique NameTCONS_00023296-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023296-protein ID=TCONS_00023296-protein|Name=TCONS_00023296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
HLYNMKIYLPRFVTDFRRTTPDANDESSKGERPKTITFRTDSIESPPYSP
LEPKSLNLNALQNMDLTRPDLKVTTPKGYTPTLTTRPVVATISSLVNSTV
KSPSPAERKRTPTPTHSKSTKKEKKESKKTESPQSLLSPPTSTKSKSPSP
KLSKKSKPAPPSPAALAAKEKEREQKEKEKKEKEQRDRERREKEKREKEQ
RDRERREQKEREKQEREREKQELKEQKEREKQEREREKQEQKEREKKERE
REKERQKQRELELKKEKEIQEEEERLAQFEREREQSDPFDDDPPSSPNRT
YLLHAPREDSPTSTLFSPPRVRIASYQSDKKKPKDKEKREKKDSSKEDKK
SKHKKKSSTLSSPASSMGSLKSPPSAKSDLLSPPKLSQPIIKHEKSSNKT
VMFPPDSSPDITDSPAKHTFASPEERKSIKQEEDESPLKISPISLSKHVK
KEAKTDVSENEIDVTSFSQGEEAVPSYSESFQPNMFFPTKFKDEKKKKKK
KKSEKDRDEKMRKKEDREKKKDRKRKLEESPTPSSSSTSTMIPKLTLKMG
SEKISDDPPPAKIPKKRAGSPPLSLKTVLKPSTSQIVKKKKEKKKDKHKE
KSRDFDDEDDNVSNSGFYVESQTDTAHSYDNKIYYCPGCGKPDDGSPMIG
CDKCDDWYHWPCVNIVEEPAEDEKWFCPNCPGGVTKKKKKKKKRDGD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013100XLOC_013100Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023296TCONS_00023296Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 588..608
NoneNo IPR availableCOILSCoilCoilcoord: 164..282
NoneNo IPR availableCOILSCoilCoilcoord: 500..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..54
NoneNo IPR availableCDDcd15522PHD_TAF3coord: 635..680
e-value: 6.22403E-28
score: 106.217
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 635..681
e-value: 6.6E-13
score: 58.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 616..693
e-value: 1.2E-18
score: 66.2
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 635..680
e-value: 3.8E-11
score: 42.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 633..683
score: 9.837
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 636..680
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 595..680

Blast
[Close]
BLAST of TCONS_00023296-protein vs. Swiss-Prot (Human)
Match: TAF3 (Transcription initiation factor TFIID subunit 3 OS=Homo sapiens GN=TAF3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.896e-25
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:  629 YDNKIYYCPGCGKPDDGSPMIGCDKCDDWYHWPCVNIVEEPAEDEKWFCPNC 680
            + N+I+ CPGC KPDDGSPMIGCD CDDWYHWPCV I+  P E+ +WFCP C
Sbjct:  861 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMTAPPEEMQWFCPKC 912
The following BLAST results are available for this feature:
BLAST of TCONS_00023296-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF31.896e-2569.23Transcription initiation factor TFIID subunit 3 OS... [more]
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