TCONS_00023398-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023398-protein
Unique NameTCONS_00023398-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023398-protein ID=TCONS_00023398-protein|Name=TCONS_00023398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MEEFQVVTRKNKKNWKKSKNLKKNEIPLLDGDTSPVIDVDKCIGRIEDIK
SSMETCDFWRTIKEEIIEEALFKSLDVKEIVLYGIGSIANSKIAQHQLSL
VLLITQYLKIKVMYYDPVLNDQEHLVLNGFNFVRILYNEECKRSVSIPTL
FVMFHCGKAMYNNLLWANWKQLSNLVVIGNAFSSYVDRIPSSQLKQTAPY
IEKVIPFTKETSITNSYHFNDVFNDTAIHVFPDDLLRKADSSFWENVKEP
ESNHEDVEIISKKEEGFTE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013165XLOC_013165Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023398TCONS_00023398Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012942SRR1-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012942Sensitivity To Red Light Reduced-like, SRR1PFAMPF07985SRR1coord: 80..127
e-value: 2.9E-11
score: 43.1

Blast
[Close]
BLAST of TCONS_00023398-protein vs. Swiss-Prot (Human)
Match: SRR1L (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.265e-37
Identity = 75/192 (39.06%), Postives = 113/192 (58.85%), Query Frame = 0 
Query:   81 VLYGIGSIANSKIAQHQLSLVLLITQYLKIKVMY---YDPVLNDQEHLVLNGFNFVRILYNEECKRSV-SIPTLFVMFHCGKAMYNNLLWANWK--QLSNLVVIGNAFSSYVDRIPSSQLKQTAPYIEKVIPFTKETSITNSYHFNDVFNDTAIHVFPDDLLRKADSSFWENVKEPE-SNHEDVEIISKKEE 265
            V YGIG+ A   +A++QL+ +LL+ +  +I   +   YDP+ +  E  VLN      +  NEE KRS+   PT+F M HCG A+YNNLLW+NW    LS +V+IGN+F    +R+ +  L++  PYI K++   +E     +  + D+FNDT++H FP   L +     WE  +EP+  + ED+EII  K E
Sbjct:  142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARILQKNYPYIAKILKGLEELEFPQTSQYMDIFNDTSVHWFPVQKLEQLSIDIWEFREEPDYQDCEDLEIIRNKRE 333
The following BLAST results are available for this feature:
BLAST of TCONS_00023398-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR1L7.265e-3739.06SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=... [more]
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