TCONS_00023447-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023447-protein
Unique NameTCONS_00023447-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023447-protein ID=TCONS_00023447-protein|Name=TCONS_00023447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MHMSVESQPMNKRHSPFFVKDILGLSDESENESDQAMDSGDDQSFRESST
EESLENLDDASCGKKTRQCFTSKQVEELERLFNETNYPDAYTRQMLAKRM
NVSETRIQIWCQNRRAKLRRQRKQRKPMLHGLSSPHSCYYPSSGAWLQPH
INSMLPFPVLPSPPHRSPVHSPLSFDSPSRHCSSYRSECNKDDICLHRDL
IRAKHDYHDLEYGRIRSYTR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013191XLOC_013191Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023447TCONS_00023447Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 63..125
e-value: 2.2E-19
score: 80.4
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 64..120
e-value: 6.4E-19
score: 67.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 61..121
score: 17.767
NoneNo IPR availableGENE3D1.10.10.60coord: 63..128
e-value: 1.6E-22
score: 78.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availableCDDcd00086homeodomaincoord: 64..122
e-value: 9.64833E-19
score: 76.128
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 96..119
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 50..123

Blast
[Close]
BLAST of TCONS_00023447-protein vs. Swiss-Prot (Human)
Match: UNC4 (Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.801e-18
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0 
Query:   39 SGDDQSFRESSTEESLENLDDASCG---KKTRQCFTSKQVEELERLFNETNYPDAYTRQMLAKRMNVSETRIQIWCQNRRAKLRRQRKQRK 126
             GD Q F+ S + +     D  S G   ++TR  FT  Q+EELE+ FNE++YPD + R+ LA R+++ E+R+Q+W QNRRAK R++   +K
Sbjct:   82 GGDGQPFKLSDSGDP----DKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKK 168
The following BLAST results are available for this feature:
BLAST of TCONS_00023447-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UNC47.801e-1842.86Homeobox protein unc-4 homolog OS=Homo sapiens GN=... [more]
back to top