TCONS_00023505-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023505-protein
Unique Name	TCONS_00023505-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	398

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023505-protein ID=TCONS_00023505-protein|Name=TCONS_00023505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MFGLQPVLLRASRTTCNCLAKSNHIKRKVVLRTLATPALKQNTDEENSIS
VLHAASDPTKHTNDDYLKFYSIDKKIIQNNLSENVPKKFKELSKALSEHT
LMLRKPALKIIQQLENTDTSNKYVIYGPQGCGKSMSLLHVLHYAIQKDWV
IVYIPNGFRLVDSQTATEVQPCQWRPGRFDQPKESLIWLNSFRQLNFNYL
QNNSTTQEYKWGKREMTEQGRPLLELIDQGISRSLYANDAVGAILKELRI
NTSTNILFAVDSFNGLYERSSHKVDGKMVDAQNLSLVHHFKKLMSPSYIL
GDRSSYVFALSQSGQYMGTKLTDLLEQDLLLNNEALEDLGDFHHIRMENY
NQREFEAIMKFYKSKNWLTRDLSDSLLNEVHFLTGGNGTSVSKYAAFI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013209	XLOC_013209	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023505	TCONS_00023505	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008092	Ribosomal_S29_mit
IPR019368	Ribosomal_S23/S29_mit
IPR027417	P-loop_NTPase

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005761	mitochondrial ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006915	apoptotic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006915	apoptotic process
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0015935	small ribosomal subunit

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008092	Ribosomal protein S29, mitochondrial	PRINTS	PR01716	DEATHASSOCP3	coord: 225..239 score: 43.81 coord: 142..153 score: 34.52 coord: 182..196 score: 39.05 coord: 86..98 score: 28.57 coord: 209..220 score: 63.1
IPR019368	Ribosomal protein S23/S29, mitochondrial	PFAM	PF10236	DAP3	coord: 101..389 e-value: 2.7E-56 score: 190.9
None	No IPR available	GENE3D	3.40.50.300		coord: 59..302 e-value: 4.9E-5 score: 22.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 277..365 coord: 97..156

Blast

[Close]

BLAST of TCONS_00023505-protein vs. Swiss-Prot (Human)
Match: RT29 (28S ribosomal protein S29, mitochondrial OS=Homo sapiens GN=DAP3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.109e-62
Identity = 118/352 (33.52%), Postives = 201/352 (57.10%), Query Frame = 0

Query:   56 SDPTKHTNDDYLKFYSIDKKIIQNNLSENVPKKFKELSKALSEHTLMLRKPALKIIQQLENTD---TSNKYVIYGPQGCGKSMSLLHVLHYAIQKDWVIVYIPNGFRLVDSQTATEVQPCQWRPGRFDQPKESLIWLNSFRQLNFNYLQNNSTTQEYKWGKREMTEQGRPLLELIDQGISRSLYANDAVGAILKELRINTST---NILFAVDSFNGLYERSSHKVDGKM-VDAQNLSLVHHFKKLMSPSYILGDRSSYVFALSQSGQYMGTKLTDLLEQDLLLNNEALEDLGDFHHIRMENYNQREFEAIMKFYKSKNWLTRD--LSDSLLNEVHFLTGGNGTSVSKYAAFI 398
            +DP KH +    + Y+I  + ++      +P +F    K  SE  LM+RKPAL+++  L+NT     + +Y++YG +G GK++SL HV+H+  ++DW+I++IP+    V  +   ++    +   RFDQP E+  WL +F+  N  +L      ++Y W KRE TE+G PL E+++QGI+R   A DAVG +LKEL+  +S    ++L AVD  N L+ R++ K + K  +  + L+LVH+ +K+M   +  G   + V ALSQ+G     +   L ++  LL  E  + L  F  I + NYN +EFE+ +++Y   NWL  +   ++    E+ FL+  N + + ++ A++
Sbjct:   54 NDPAKHGDQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWV--KNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGG---AIVSALSQTGSLFKPRKAYLPQE--LLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 398

The following BLAST results are available for this feature:

BLAST of TCONS_00023505-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023505-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RT29	2.109e-62	33.52	28S ribosomal protein S29, mitochondrial OS=Homo s...	[more]

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TCONS_00023505-protein (polypeptide) - C. hemisphaerica