TCONS_00023764-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023764-protein
Unique Name	TCONS_00023764-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	799

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023764-protein ID=TCONS_00023764-protein|Name=TCONS_00023764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=799bp
MQLIDKKYPSSERGDLLIFMSGMNEIASVVEAAKEYALRTKRWIVLPLHS
TLSIEEQEKIFDFPPEGVRKCIVSTNIAETSVTIDGVRFIADSGKVKEMT
YDAQVKMERLQEFWISQASAEQRKGRAGRTGPGVCFRLYSDDDYGAFDQY
STPEIHRVPLDSLVLQMAGLGLRDPTLFPFIEPPQKANLVNAVYFLKAQN
ALTRDGELTAIGNMLSKLPVDICIGKMLIMGCLFSIVDPVLVIAAALSVQ
SPMTRKFGVADDTEHRRKEYFSPHGDPFTLLNIYDEWILVKSDRSANSKK
WCKRRGFEEQRFYEISKLRNQFEGILRDHKLLKKNQDSASSSSSKRSIEE
RLERKRLAKLKHEHKTTGRRKKKMLKMDNQYGDVDYSDQESDADEDENPK
IDINDVEFKMKHNLMKLEASSKKNRRFTIRDINLLKLIISSGLFPQVVLP
DEANQYRKQTEQVYHSKDKQFLTLHPTSVYSLQHDFLDSLYDEKKLSNEA
TNKPSSSKKSEERGLLARELLVYVSLLETNKPYVVNAMKVQMLQTLFLLS
NTIDTNSDFTKIVFNEWIELSFEGNDSSSEGKQSSKNASEELISNVVQLR
KNWNDLLEQKLLLHECDDEKEEKSRRKRITELENEISFALAGFIDTKIDY
TARRLMSVEVKSMYVGHNPNMDSSNPPSSNKTPNTVKGGVFMTPYLTYGC
LKDDLSSSVSAGEAEFLVQHYHCPKCGQHLICTVVERIQHDENCSVQANQ
EQSTSKNIETELEGEPEKPSNAKNFLCDICKEELFLTPIEILRHKKSHL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013353	XLOC_013353	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023764	TCONS_00023764	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007502	Helicase-assoc_dom
IPR001650	Helicase_C
IPR011709	DUF1605
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004386	helicase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007502	Helicase-associated domain	SMART	SM00847	ha2_5	coord: 191..281 e-value: 7.7E-22 score: 88.6
IPR007502	Helicase-associated domain	PFAM	PF04408	HA2	coord: 192..296 e-value: 1.7E-14 score: 54.0
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 32..131 e-value: 3.3E-15 score: 66.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 11..131 e-value: 7.3E-12 score: 45.6
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 3..171 score: 15.289
None	No IPR available	GENE3D	3.40.50.300		coord: 1..151 e-value: 1.6E-47 score: 160.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 747..769
None	No IPR available	CDD	cd00079	HELICc	coord: 1..138 e-value: 6.3656E-9 score: 53.7809
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 435..550 e-value: 2.7E-8 score: 33.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..282

Blast

[Close]

BLAST of TCONS_00023764-protein vs. Swiss-Prot (Human)
Match: DHX34 (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=1 SV=2)

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 356/804 (44.28%), Postives = 509/804 (63.31%), Query Frame = 0

Query:    1 MQLIDKKYPSSERGDLLIFMSGMNEIASVVEAAKEYALRTKRWIVLPLHSTLSIEEQEKIFDFPPEGVRKCIVSTNIAETSVTIDGVRFIADSGKVKEMTYDAQVKMERLQEFWISQASAEQRKGRAGRTGPGVCFRLYSDDDYGAFDQYSTPEIHRVPLDSLVLQMAGLGLRDPTLFPFIEPPQKANLVNAVYFLKAQNALTRDGELTAIGNMLSKLPVDICIGKMLIMGCLFSIVDPVLVIAAALSVQSPMTRKFGVADDTEHRRKEYFSPHGDPFTLLNIYDEWILVKSDRSANSKKWCKRRGFEEQRFYEISKLRNQFEGILRDHKLLKKNQDSASSSSSKRSIEERLERKRLAKLKHEHKTTGRRKKKMLKM-DNQYGDVDYSDQESDADEDENPKIDINDVEFKMKHNLMKLEASSKKNRRFTIRDINLLKLIISSGLFPQVVLPDEANQYRKQTEQVYHSKDKQFLTLHPTSVYSLQHDFLDSLYDEKKLSNEATNKPSSSKKSEERGLLARELLVYVSLLETNKPYVVNAMKVQMLQTLFLLSNTIDTNSDFTKIVFNEWIELSFEGNDSSSEGKQSSKNASEELISNVVQLRKNWNDLLEQKLLLHECDDEKEEKSRRKRITELENEISFALAGFIDTKIDYTARRLMSVEVKSMYVGHNPNMDSSNPP----SSNKTPNTVKGGVFMTPYLTYGCLKDDLSSSVSAGEAEFLVQHYHCPKCGQHLICTVVERIQHDENCSVQANQEQSTSKNIETELEGEPEKPSNAKNFLCDICKEELFLTPIEILRHKKSHL 799
            ++ ID KYP  ERGDLL+F+SGM EI++V+EAA+ YA  T+RW+VLPLHS LS+ +Q+K+FD  P GVRKCI+STNIAETSVTIDG+RF+ DSGKVKEM+YD Q K++RLQEFWISQASAEQRKGRAGRTGPGVCFRLY++ DY AF  Y  PEI RV LDSLVLQM  + + DP  FPFIEPP  A+L  A+ +L+ Q AL     LT IG++L++LPVD+ IGKMLI+G +FS+V+PVL IAAALSVQSP TR    + +    R+   S  GDPFTL N+++ W+ VKS+RS NS+KWC+RRG EE R YE++ LR QF+ +L DH LL   Q +    S  R +++R ER+ L +LK +H+    R++K+L++ + Q G     D+   A    +  +DI DV+FK++H+L +L+A++   +  +   + LLKL++  GL+PQ+ +PD  N  RK ++Q++H++ KQ   LHPT V++   + L +   E + SN   ++    K S +      +LL +VSLLETNKPY+VN +++  LQ+L L S ++DTN D +++V + W+EL    ++S+             L++  ++LR  W   L+++L        +EE+       +    +S  L  F  +KI Y+ RRL  +EV++MYVG      + + P    SS  +P+  KGG  +T +LTY CL +D         ++ L   + CP CG H   T +ERI H+  C  QA Q+       E  LE   +     + + C+ C ++   TP E+LRH+K H+
Sbjct:  366 LESIDHKYPPEERGDLLVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFKELLEDHGLLAGAQAAQVGDSYSR-LQQRRERRALHQLKRQHEEGAGRRRKVLRLQEEQDGGSSDEDRAGPAPPGASDGVDIQDVKFKLRHDLAQLQAAASSAQDLSREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVLHA--QELEASNCDGSRDDKDKMSSK-----HQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRSLDTNGDCSRLVADGWLELQLADSESAI-----------RLLAASLRLRARWESALDRQLAHQAQQQLEEEEEDTPVSPKEVATLSKELLQFTASKIPYSLRRLTGLEVQNMYVGPQTIPATPHLPGLFGSSTLSPHPTKGGYAVTDFLTYNCLTNDTDLY-----SDCLRTFWTCPHCGLHAPLTPLERIAHENTCP-QAPQDGPPGAE-EAALETLQKTSVLQRPYHCEACGKDFLFTPTEVLRHRKQHV 1143

The following BLAST results are available for this feature:

BLAST of TCONS_00023764-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023764-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHX34	0.000e+0	44.28	Probable ATP-dependent RNA helicase DHX34 OS=Homo ...	[more]

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TCONS_00023764-protein (polypeptide) - C. hemisphaerica