TCONS_00023765-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023765-protein
Unique Name	TCONS_00023765-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	320

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023765-protein ID=TCONS_00023765-protein|Name=TCONS_00023765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MDLWNDYKSLLNYVFFSNDDVIQKNTKEQADFWTFLEKYEKFKNRKKSQP
EPSKLSPEKNEFDFPSVYNKRYKINFAINTTELKHRYKEYVSRRYDRSKD
CKLSTDDLMEFKQILLYYLDFLQKQKFNKLTKLKEDQRNLPIKQYEDEIV
YAVKTNQVVLVAGDTGCGKSTQVPQYLLRGGFAKIACTQPRRIACISLAK
RVSYETLNEYRSDIAYQVRFETSKSKATRILFLTEGLLLRQFQSDPDLSM
YDVIVVDEVHERHINGDFLLGVLKCLLEKRKDLKLVLMSATINIDLFTNY
FRSAPVIQVPGRLFPIELQY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013354	XLOC_013354	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023765	TCONS_00023765	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 129..319 e-value: 5.4E-24 score: 95.7
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 150..310 score: 19.255
None	No IPR available	GENE3D	3.40.50.300		coord: 139..294 e-value: 6.6E-27 score: 93.8
None	No IPR available	CDD	cd00046	DEXDc	coord: 157..292 e-value: 3.09338E-23 score: 92.0152
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 142..317

Blast

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BLAST of TCONS_00023765-protein vs. Swiss-Prot (Human)
Match: DHX34 (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.770e-105
Identity = 164/323 (50.77%), Postives = 224/323 (69.35%), Query Frame = 0

Query:    4 WN--DYKSLLNYVFFSNDDVIQKNTKEQADFWTFLEKYEKFKNRKKSQPEPSKLSPEKNEF----DFPSVYNKRYKINFAINTTELKHRYKEYVSRRYDRSKDCKLSTDDLMEFKQILLYYLDFLQKQKFNKLTKLKEDQRNLPIKQYEDEIVYAVKTNQVVLVAGDTGCGKSTQVPQYLLRGGFAKIACTQPRRIACISLAKRVSYETLNEYRSDIAYQVRFETSKSKATRILFLTEGLLLRQFQSDPDLSMYDVIVVDEVHERHINGDFLLGVLKCLLEKRKDLKLVLMSATINIDLFTNYFRSAPVIQVPGRLFPIELQY 320
            WN  + + LL   FF  +D I++ ++E   FWTF E+ ++F+N K S+ E       K+      D P  Y+ RY+IN ++             + R  +     L  + + EF++ LL+YLDF QKQ F +L KL+ ++  LPI QY + I+  +K +QVV+VAGDTGCGKSTQVPQYLL  GF+ +ACTQPRRIACISLAKRV +E+L++Y S + YQ+RFE+++S AT+I+FLT GLLLRQ Q +P L  Y+V++VDEVHERH++ DFLLGVL+ LL  R DLK++LMSATINI LF++YF +APV+QVPGRLFPI + Y
Sbjct:   30 WNCPETRRLLEDAFFREEDYIRQGSEECQKFWTFFERLQRFQNLKTSRKEEKDPGQPKHSIPALADLPRTYDPRYRINLSVLGP----------ATRGSQGLGRHLPAERVAEFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVY 342

The following BLAST results are available for this feature:

BLAST of TCONS_00023765-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHX34	1.770e-105	50.77	Probable ATP-dependent RNA helicase DHX34 OS=Homo ...	[more]

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TCONS_00023765-protein (polypeptide) - C. hemisphaerica