TCONS_00024159-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024159-protein
Unique NameTCONS_00024159-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024159-protein ID=TCONS_00024159-protein|Name=TCONS_00024159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
RSAICYLQIYIFFQKKINNTVIKMLIKKVRKEHLYGVAPCLSAILSMRRK
IYKAYVNEKFQKQLPARQDFVKVMEEMRSKDIKVVYKSKDLMNRISGNQL
HQSIILSTSTLNYKQLTKKEIKPSSDKSFWLALDRVQDPMNLGAIIRTAS
YFGVEKLIVTEKNSCALSPVVSKASSGAMEWNPVHATPSMKNFLKTAVSN
GFMIYGTQCSDKDSESRIINCQAVRLDKPCILVLGNEGSGLDEETESMCH
HLINIQSSANTPNTLDSLNVSVAAGILLHALSSNRKIGAENPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013560XLOC_013560Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024159TCONS_00024159Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013123SpoU_subst-bd
IPR001537SpoU_MeTrfase
IPR029026tRNA_m1G_MTases_N
IPR004441rRNA_MeTrfase_TrmH
IPR029064L30e-like
IPR029028Alpha/beta_knot_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008173 RNA methyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013123RNA 2-O ribose methyltransferase, substrate bindingSMARTSM00967SpoU_sub_bind_2coord: 33..114
e-value: 1.1E-4
score: 31.6
IPR013123RNA 2-O ribose methyltransferase, substrate bindingPFAMPF08032SpoU_sub_bindcoord: 34..113
e-value: 2.6E-8
score: 33.9
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 131..279
e-value: 4.4E-32
score: 111.1
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 125..292
e-value: 8.2E-46
score: 155.3
IPR004441RNA methyltransferase TrmH familyTIGRFAMTIGR00186TIGR00186coord: 34..283
e-value: 6.4E-48
score: 161.3
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 23..109
e-value: 3.1E-10
score: 39.7
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 31..109
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 115..284

Blast
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BLAST of TCONS_00024159-protein vs. Swiss-Prot (Human)
Match: MRM1 (rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.935e-57
Identity = 100/279 (35.84%), Postives = 162/279 (58.06%), Query Frame = 0 
Query:   15 KKINNTVIKMLIKKVRKEHLYGVAPCLSAILSMRRKIYKAYVNEKFQKQLPARQDFVKVMEEMRSKDIKVVYKSKDLMNRISGNQLHQSIILSTSTLNYKQLTKK-EIKPSSD-KSFWLALDRVQDPMNLGAIIRTASYFGVEKLIVTEKNSCALSPVVSKASSGAMEWNPVHATPSMKNFLKTAVSNGFMIYGT-QCSDKD----SESRIINCQAVRLDKPCILVLGNEGSGLDEETESMCHHLINIQSSANTPNTLDSLNVSVAAGILLHALSSNRK 286
            ++++  ++  L+   R E L+G+ PCL A+ + RR + +  +          R + +++ E   ++DI V+   +  ++ +   Q+HQ + +  S L  +   +  E  P  D +  WL LD +QDP N GA++R+A + GV+K+I + +NSC L+PVVSK+S+GAME   V +T  +  FL+T    G+++ GT  C   +    SE  I++C     ++P +LVLGNEGSGL +E ++ C  L+ I      P  L+SLNVSVAAGILLH++ S RK
Sbjct:   33 EELSRLLLDDLVPTSRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAE---ARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICSQRK 308
The following BLAST results are available for this feature:
BLAST of TCONS_00024159-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRM11.935e-5735.84rRNA methyltransferase 1, mitochondrial OS=Homo sa... [more]
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