TCONS_00024168-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024168-protein
Unique NameTCONS_00024168-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024168-protein ID=TCONS_00024168-protein|Name=TCONS_00024168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MAENIRTSLTNLANQGRSQKDSIDKYRAHLNEILSLQNPELTDLLKSFLT
TALQENVSVVVSRQLVSDVATALKSLDATTIKDVSYFTLNNLQTRAISFE
EQVVNIRQHLANVLQEEGDWRKSAEALVGIPLETGQKQYSNAFKMEIYLN
IAQLYLEDDDPVQADIYINRASLLQKSDDTTDALTIKYKVCYARVLDYRR
KFLEAAQRYNELSYNTLIADSERINALKHSLICTILASAGRQRSRMLATL
FKDERCQQLPAHEILEKMYLDRIIRGPQLKEFSDMLLDHQKATTADGSTI
LDRAVVEHNLLAISKIYKNISIDQLGILLEISQQKAEKIVSSMICNNTIK
GFIDQVEGFVYFEAQEVLESFDQQIQSVCLHVNDVMDRIQEHVPDWQFNI
ADKSIIMDTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013564XLOC_013564Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024168TCONS_00024168Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 296..378
e-value: 3.6E-15
score: 66.4
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 296..378
e-value: 3.6E-15
score: 66.4
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 269..363
e-value: 1.2E-18
score: 67.5
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 290..370
e-value: 1.1E-17
score: 63.3
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 295..364
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 1..209
e-value: 1.6E-5
score: 24.3

Blast
[Close]
BLAST of TCONS_00024168-protein vs. Swiss-Prot (Human)
Match: CSN4 (COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1)

HSP 1 Score: 504.597 bits (1298), Expect = 4.055e-179
Identity = 241/396 (60.86%), Postives = 307/396 (77.53%), Query Frame = 0 
Query:    1 MAENIRTSLTNLANQGRSQKDSIDKYRAHLNEILSLQNPELTDLLKSFLTTALQENVSVVVSRQLVSDVATALKSLDATTIKDVSYFTLNNLQTRAISFEEQVVNIRQHLANVLQEEGDWRKSAEALVGIPLETGQKQYSNAFKMEIYLNIAQLYLEDDDPVQADIYINRASLLQKSDDTTDALTIKYKVCYARVLDYRRKFLEAAQRYNELSYNTLIADSERINALKHSLICTILASAGRQRSRMLATLFKDERCQQLPAHEILEKMYLDRIIRGPQLKEFSDMLLDHQKATTADGSTILDRAVVEHNLLAISKIYKNISIDQLGILLEISQQKAEKIVSSMICNNTIKGFIDQVEGFVYFEAQEVLESFDQQIQSVCLHVNDVMDRIQEHVPDW 396
            MA  +R  L  L N   S KD   KYR  L + + L   E  + LK+F+   + ENVS+V+SRQL++D  T L +L  +T K++ +FTL  +Q R ISFEEQV +IRQHLA++ ++E DWR +A+ LVGIPLETGQKQY+  +K+E YL IA+LYLEDDDPVQA+ YINRASLLQ ++ T + L I YKVCYARVLDYRRKF+EAAQRYNELSY T++ +SER+ ALKH+L CTILASAG+QRSRMLATLFKDERCQQL A+ ILEKMYLDRIIRG QL+EF+ ML+ HQKATTADGS+ILDRAV+EHNLL+ SK+Y NI+ ++LG LLEI   KAEKI S MI    + GFIDQ++G V+FE +E L ++D+QIQS+C  VN+++++I +  P+W
Sbjct:    1 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQ-NESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEW 395
The following BLAST results are available for this feature:
BLAST of TCONS_00024168-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN44.055e-17960.86COP9 signalosome complex subunit 4 OS=Homo sapiens... [more]
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