TCONS_00024248-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024248-protein
Unique NameTCONS_00024248-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024248-protein ID=TCONS_00024248-protein|Name=TCONS_00024248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp
MAHLSSGRVNLAQMREGIRRQLLRCLDKCPGSKAIIWDDKLTGPVGLIAE
YSLLKEHDVGKMFPLVRGKLPSCEEHNIIFLVRPKLETMDIIAENVKGYG
KNHSKEFHIFFVPSKSNLCELSLEKSGVYGSFSVIDEFDLSLIPFDNDIM
SLEQEKAFYECYVENDLTSMLYVANSLMTIQALFGTIPKIYGKGQLAKHV
TDIILRKRREMADNECQITPLIDNLVLIDRNIDLLTPLLTQLTYEGLIDE
SLKIENTCCQVPTPKDEPKNKQQPEGIQKAKPKKVILNSGENLYAEIRDM
NFSAVGPVLSREAKRITAEYEEHRAAKTVGEMKEFVHKLPHIQAAKQSLA
QHTSIAELMKEHTDSDDFRESLRVEQEFFHGIDTDKAHPYIEQCIGVKEP
IQKVLRLVCLQCFVNNGFKVKLFDYYRREIIQTYGFEHLLTLNNLETVGM
LRSTMQQRNYNLLRKSLKLVVEDVQETQPNDIAYVHSGYAPLSVRLAQFL
ERQSGWRGLEEILKQLPGPTVEEKQNIPAALLKKNTGGQSNADGPPRVTL
VYFLGGCTYSEISALRFLAQQENASTDYVIATTNIINGTSLVESAIEQMD
KIPVNNG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013610XLOC_013610Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024248TCONS_00024248Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001619Sec1-like
Vocabulary: Biological Process
TermDefinition
GO:0006904vesicle docking involved in exocytosis
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006904 vesicle docking involved in exocytosis
biological_process GO:0016192 vesicle-mediated transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1910coord: 141..602
e-value: 2.0E-60
score: 204.8
NoneNo IPR availableGENE3D3.40.50.2060coord: 3..140
e-value: 2.2E-31
score: 107.9
IPR001619Sec1-like proteinPIRSFPIRSF005715VPS45_Sec1coord: 66..603
e-value: 2.5E-33
score: 113.4
IPR001619Sec1-like proteinPFAMPF00995Sec1coord: 33..593
e-value: 9.4E-119
score: 398.1
IPR001619Sec1-like proteinSUPERFAMILY56815Sec1/munc18-like (SM) proteinscoord: 9..594

Blast
[Close]
BLAST of TCONS_00024248-protein vs. Swiss-Prot (Human)
Match: VP33A (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1)

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 338/599 (56.43%), Postives = 441/599 (73.62%), Query Frame = 0 
Query:    2 AHLSSGRVNLAQMREGIRRQLLRCLDKCPGSKAIIWDDKLTGPVGLIAEYSLLKEHDVGKMFPLVRGKLPSCEEHNIIFLVRPKLETMDIIAENVKGYGKNH-SKEFHIFFVPSKSNLCELSLEKSGVYGSFSVIDEFDLSLIPFDNDIMSLEQEKAFYECYVENDLTSMLYVANSLMTIQALFGTIPKIYGKGQLAKHVTDIILRKRREMADNECQITPLIDNLVLIDRNIDLLTPLLTQLTYEGLIDESLKIENTCCQVPTPKDEPKNKQQPEGIQKAKPKKVILNSGENLYAEIRDMNFSAVGPVLSREAKRITAEYEEHRAAKTVGEMKEFVHKLPHIQAAKQSLAQHTSIAELMKEHTDSDDFRESLRVEQEFFHGIDTDKAHPYIEQCIGVKEPIQKVLRLVCLQCFVNNGFKVKLFDYYRREIIQTYGFEHLLTLNNLETVGMLR-STMQQRNYNLLRKSLKLVVEDVQETQPNDIAYVHSGYAPLSVRLAQFLERQSGWRGLEEILKQLPGPTVEEKQNIPAALLKKNTGGQSNADGPPRVTLVYFLGGCTYSEISALRFLAQQENASTDYVIATTNIINGTSLVESAIEQ 598
            AHLS GRVNL  +RE +RR+L   LDKC GSKAI+WD+ LTGP GLIA+YSLLKEH+V KMF L   +LP+ +  NIIF VRP+LE MDIIAENV    +   +++FHI FVP +S LCE  L+  GV GSF   +E+ L LIPFD D++S+E E AF ECY+E D TS+ + A  LMT+QAL+GTIP+I+GKG+ A+ V ++++R +RE   ++  I P+ DNL+L+DRN+DLLTPL TQLTYEGLIDE   I+N+  ++P  K  PK +         + KK+ LNS E LYAEIRD NF+AVG VLS++AK I+A +EE   AKTVGE+K+FV +LPH+QAA+ SLA HTSIAEL+K+ T S+DF + L VEQEF  GIDTDK + YIE CI  K  + KVLRLVCLQ   N+G K K+ DYY+REI+QTYG+EH+LTL+NLE  G+L+  T  + NY  +RK+L+L ++DV E  P DI+YV+SGYAPLSVRLAQ L R  GWR +EE+L+ LPGP  EE+Q +P  L KK   G++      RVTL++FLGG T++EI+ALRFL+Q E+  T+YVIATT ++NGTS +E+ +E+
Sbjct:    3 AHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSR-PGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPGEN------RVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALMEK 594
The following BLAST results are available for this feature:
BLAST of TCONS_00024248-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP33A0.000e+056.43Vacuolar protein sorting-associated protein 33A OS... [more]
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