TCONS_00024739-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024739-protein
Unique NameTCONS_00024739-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024739-protein ID=TCONS_00024739-protein|Name=TCONS_00024739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MNLNDTSYGNGLLYVGFNQDQGCFACGMENGFRIYNCDPIKEKEKQNFTE
GGISFVEMLFRCNYLAFVGGRNNTKYPANEVKIWDDLKKKCVISLDFSSD
VKSVRLRRDRIVVVLDTMIKVYTFTQNPQQLHVFETCPNPKGLCVLCPSS
QNSLLAFPGRKPGHVQVVDLASTERPPIEFDAHEAALSCIAMNLQGTKLA
TSSEKGTLIRVFDTLSGQQLHELRRGAGNANIYCINFNQDASLLCVSSDH
GTVHIFAIEDTEKNKSLGIPSSLLPKYFSSKWSFSRFQVPDCAHCICAFG
ATDNSVIAICGDGSYYKFVFNNKGDCTRDACHQFLQMTDND
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013895XLOC_013895Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024739TCONS_00024739Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 88..123
e-value: 160.0
score: 3.2
coord: 173..213
e-value: 0.017
score: 24.3
coord: 216..257
e-value: 0.17
score: 21.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 3..322
e-value: 4.0E-33
score: 114.1
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 10..314

Blast
[Close]
BLAST of TCONS_00024739-protein vs. Swiss-Prot (Human)
Match: WIPI3 (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2)

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 245/334 (73.35%), Postives = 281/334 (84.13%), Query Frame = 0 
Query:    8 YGNGLLYVGFNQDQGCFACGMENGFRIYNCDPIKEKEKQNFTEGGISFVEMLFRCNYLAFVGGRNNTKYPANEVKIWDDLKKKCVISLDFSSDVKSVRLRRDRIVVVLDTMIKVYTFTQNPQQLHVFETCPNPKGLCVLCPSSQNSLLAFPGRKPGHVQVVDLASTERPPIEFDAHEAALSCIAMNLQGTKLATSSEKGTLIRVFDTLSGQQLHELRRGAGNANIYCINFNQDASLLCVSSDHGTVHIFAIEDTEKNKSLGIPS-SLLPKYFSSKWSFSRFQVPDCAHCICAFGATDNSVIAICGDGSYYKFVFNNKGDCTRDACHQFLQMTDN 340
            +GNGLLY GFNQD GCFACGMENGFR+YN DP+KEKEKQ F EGG+  VEMLFRCNYLA VGG    KYP N+V IWDDLKKK VI ++FS++VK+V+LRRDRIVVVLD+MIKV+TFT NP QLHVFETC NPKGLCVLCP+S NSLLAFPG   GHVQ+VDLASTE+PP++  AHE  LSCIA+NLQGT++AT+SEKGTLIR+FDT SG  + ELRRG+  ANIYCINFNQDASL+CVSSDHGTVHIFA ED ++NK   + S S LPKYFSSKWSFS+FQVP  + CICAFG   N+VIAIC DGSYYKF+FN KG+C RD   QFL+MTD+
Sbjct:    9 HGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPKGECIRDVYAQFLEMTDD 342
The following BLAST results are available for this feature:
BLAST of TCONS_00024739-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WIPI30.000e+073.35WD repeat domain phosphoinositide-interacting prot... [more]
back to top