TCONS_00024744-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024744-protein
Unique NameTCONS_00024744-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024744-protein ID=TCONS_00024744-protein|Name=TCONS_00024744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MTKKELTAREKIILQELQKRKETVLKEIQQINDEITEISKELEIMDQQDE
SPASSKEKLLAVGVKKFNINVKKGLEYITKNGLINETPEDIAKFLYKNDG
LNKVKIGEYLGENLDLQLKVLKEFVQLHDFENKTLDAALRDFLWSFRLPG
EAQKIDRMMESFAEQYCLLNPGKFKTADTCYVLSFSTIMLNTSLHNPNVK
DKITVEGFIKMNKGINDGGDIPSEMLEELFSSIANQPFEISGNDENDLVK
TFFNPEREGMLTKEGGIHRTWKPRYFILKDNCLFYFRNKGDKEPTGIIPL
ENLQVRENNDIRRKHCFEIYAPGGAIIKACKTESDGKVVTGHHDIYRICA
SSAEERGEWIKSIKNSITRDPFYDMLQARKKKATHKQVQPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013899XLOC_013899Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024744TCONS_00024744Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000904Sec7_dom
IPR001849PH_domain
IPR011993PH_dom-like
IPR023394Sec7_alpha_orthog
Vocabulary: Biological Process
TermDefinition
GO:0032012regulation of ARF protein signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005086ARF guanyl-nucleotide exchange factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032012 regulation of ARF protein signal transduction
molecular_function GO:0005086 ARF guanyl-nucleotide exchange factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..48
NoneNo IPR availableGENE3D1.10.220.20coord: 50..128
e-value: 7.8E-26
score: 89.4
NoneNo IPR availableCDDcd01252PH_GRP1-likecoord: 253..370
e-value: 2.62696E-64
score: 202.544
NoneNo IPR availableCDDcd00171Sec7coord: 56..238
e-value: 2.70063E-81
score: 248.677
IPR000904Sec7 domainSMARTSM00222sec7_5coord: 53..238
e-value: 6.9E-85
score: 298.0
IPR000904Sec7 domainPFAMPF01369Sec7coord: 57..238
e-value: 6.0E-64
score: 215.1
IPR000904Sec7 domainPROSITEPS50190SEC7coord: 49..236
score: 40.963
IPR000904Sec7 domainSUPERFAMILY48425Sec7 domaincoord: 56..242
IPR001849Pleckstrin homology domainSMARTSM00233PH_updatecoord: 255..370
e-value: 2.0E-19
score: 80.6
IPR001849Pleckstrin homology domainPFAMPF00169PHcoord: 256..367
e-value: 2.7E-24
score: 85.6
IPR001849Pleckstrin homology domainPROSITEPS50003PH_DOMAINcoord: 254..368
score: 18.432
IPR011993PH domain-likeGENE3D2.30.29.30coord: 251..375
e-value: 1.6E-28
score: 98.3
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 253..373
IPR023394Sec7 domain, alpha orthogonal bundleGENE3D1.10.1000.11coord: 129..248
e-value: 1.9E-47
score: 159.5

Blast
[Close]
BLAST of TCONS_00024744-protein vs. Swiss-Prot (Human)
Match: CYH2 (Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2)

HSP 1 Score: 459.529 bits (1181), Expect = 8.901e-162
Identity = 218/391 (55.75%), Postives = 295/391 (75.45%), Query Frame = 0 
Query:    5 ELTAREKIILQELQKRKETVLKEIQQINDEITEISKELEIMDQQDESPASSKEKLLAVGVKKFNINVKKGLEYITKNGLINETPEDIAKFLYKNDGLNKVKIGEYLGENLDLQLKVLKEFVQLHDFENKTLDAALRDFLWSFRLPGEAQKIDRMMESFAEQYCLLNPGKFKTADTCYVLSFSTIMLNTSLHNPNVKDKITVEGFIKMNKGINDGGDIPSEMLEELFSSIANQPFEISGNDENDLVKTFFNPEREGMLTKEGGIH-RTWKPRYFILKDNCLFYFRNKGDKEPTGIIPLENLQVRENNDIRRKHCFEIYAPG--GAIIKACKTESDGKVVTGHHDIYRICASSAEERGEWIKSIKNSITRDPFYDMLQARKKKAT--HKQVQP 390
            +LT  E++ L+ +++RK+ +L EIQ++ +E++E   E+E ++  + S    + + +A+G KKFN++ KKG++++ +N L+  TPE+IA+FLYK +GLNK  IG+YLGE  +L L VL  FV LH+F +  L  ALR FLWSFRLPGEAQKIDRMME+FA++YCL NPG F++ DTCYVLSF+ IMLNTSLHNPNV+DK  +E F+ MN+GIN+GGD+P E+L  L+ SI N+PF+I  +D NDL  TFFNP+REG L K GG   +TWK R+FIL DNCL+YF    DKEP GIIPLENL +RE +D R+ +CFE+Y P   G +IKACKTE+DG+VV G+H +YRI A + EE+ EWIKSI+ +++ DPFY+ML ARKK+ +   KQ QP
Sbjct:   10 DLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAVSVDPFYEMLAARKKRISVKKKQEQP 400
The following BLAST results are available for this feature:
BLAST of TCONS_00024744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CYH28.901e-16255.75Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2[more]
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