TCONS_00025019-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00025019-protein
Unique Name	TCONS_00025019-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	969

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00025019-protein ID=TCONS_00025019-protein|Name=TCONS_00025019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=969bp
MLKNLRRKAPEKDKLGHDLFKLAKTGEHGSPNKPSAIAYDSQLHLLAIGT
QSGHLKVYGKPGVELIAQESSAATTCIQQLFFLEGQGRIISVCDDGEQNT
LHLWEINNPYGSKSILEEVKACTLEGRLKKISVCCLSMAKECLYIGTEGG
HIYVLDLISFELKDHVIYQDIVMQSLPGNTTDNKKSNGGSVEALQEHPTD
PEKLLIGYKKGIIVLWNQSKIKAEGPFVAQPEVESVYWHKSCERFISAHE
NGSLSVWKVPQHETGNIEQQSSTPFGPFPCKAIRKVEWHNDTVIFSGGLP
RASYGDKHSVSILEDNTVKVVLDFTSKVIDFFSIYEEHVLDALVVLCEEE
VVVVDLKNSSEKGYQVYDKPYLACIHSSPISATTHVTDIPKDLWAFLVEA
GKKQTGNDTSLESWPVDGGRCLLPELMKHDILITGHEDGTVKFWNVTGLS
FTLIYTISTSKLFQSDMDDGPPPDDGDDEDWPPFKKVGNFDPFADDPRFV
VQKILLCPVTKVLLVGGSGGQLMIYNLQENEKDSTEITDVNVIANLEGFE
WKGHGPLSLRTDPVQTQHGILPERVLQLRPSAPITAIAMESAWGLLAVGT
CHGLVVFDYLLHKVALVKCTVNPTDLANTGAGIQRKRTLAKSLRDSFRRL
RSKRGSKRGKKDGNKADGAASPGGVRSVGYEASPQTRLIDEQRVDEDMLS
MVRCIYFGETFLGDGGHRTATMWAGTNAGYIYVYSLIIPPKDERHTTEVK
TEVGKELKLKHHAPVVNIFVVDKNGVPVCSVSEQEAGRTQKSDMSGGHSV
LISSEEQFKVFTLPTLRPRNKEKLTAVDGSRVRKLGIIDIPSKTPEGADI
VHHCLMCLTNQGDVMIYSIPNLKQQMKKNVAKREDIRAISSLLFTHDGEG
FYLKSTSELQRFSVLSSNKIVPDTIIKLPHGMRPDEDDRSDDDELTSPTS
PTSPVSFNSNITNHKTEKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_014065	XLOC_014065	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00025019	TCONS_00025019	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000664	Lethal2_giant
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR013577	LLGL2
IPR013905	Lgl_C_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000664	Lethal(2) giant larvae protein	PRINTS	PR00962	LETHAL2GIANT	coord: 14..32 score: 52.63 coord: 616..635 score: 35.0 coord: 509..527 score: 36.09 coord: 545..564 score: 47.14 coord: 338..358 score: 49.66 coord: 429..452 score: 54.76 coord: 586..610 score: 45.71 coord: 291..313 score: 60.25 coord: 681..700 score: 28.57
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 407..445 e-value: 49.0 score: 6.3 coord: 483..526 e-value: 240.0 score: 2.0 coord: 117..156 e-value: 100.0 score: 4.3 coord: 19..59 e-value: 220.0 score: 2.3 coord: 169..217 e-value: 83.0 score: 4.9 coord: 220..258 e-value: 13.0 score: 9.9 coord: 571..608 e-value: 450.0 score: 0.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 430..445 e-value: 0.24 score: 12.3
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 643..960 e-value: 0.0017 score: 16.8
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 174..610 e-value: 2.4E-19 score: 68.8 coord: 6..173 e-value: 3.2E-12 score: 45.4
IPR013577	Lethal giant larvae homologue 2	PFAM	PF08366	LLGL	coord: 272..358 e-value: 6.0E-26 score: 90.7
IPR013905	Lethal giant larvae (Lgl)-like, C-terminal domain	PFAM	PF08596	Lgl_C	coord: 690..936 e-value: 3.5E-11 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 927..969
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 650..679
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 432..446
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 430..460 coord: 498..531 coord: 686..788 coord: 844..900 coord: 572..612
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 501..526 coord: 29..277 coord: 417..463

Blast

[Close]

BLAST of TCONS_00025019-protein vs. Swiss-Prot (Human)
Match: L2GL1 (Lethal(2) giant larvae protein homolog 1 OS=Homo sapiens GN=LLGL1 PE=1 SV=3)

HSP 1 Score: 687.567 bits (1773), Expect = 0.000e+0
Identity = 379/956 (39.64%), Postives = 563/956 (58.89%), Query Frame = 0

Query:    1 MLK-NLRRKA--PEKDKLGHDLFKLAKTGEHGSPNKPSAIAYDSQLHLLAIGTQSGHLKVYGKPGVELIAQESSAATTCIQQLFFLEGQGRIISVCDDGEQNTLHLWEINNPYGSKSILEEVKACTLEGR-----------LKKISVCCLSMAKECLYIGTEGGHIYVLDLISFEL-KDHVIYQDIVMQSLPGNTTDNKKSNGGSVEALQEHPTDPEKLLIGYKKGIIVLWNQSKIKAEGPFVAQPEVESVYWHKSCERFISAHENGSLSVWKVPQHETGNIEQQ-SSTPFGPFPCKAIRKVEWHN-----DTVIFSGGLPRASYGDKHSVSILEDNTVKVVLDFTSKVIDFFSIYE---EHVLDALVVLCEEEVVVVDLKNSSEKGYQVYDKPYLACIHSSPISATTHVTDIPKDLWAFLVEAGKKQTGND-TSLESWPVDGGRCLLPELMKHDILITGHEDGTVKFWNVTGLSFTLIYTISTSKLFQSDMDDGPPPDDGDDEDWPPFKKVGNFDPFADDPRFVVQKILLCPVTKVLLVGGSGGQLMIYNLQENE-KDSTEITDVNVIANLEGFEWKGHGPLSLRTDPVQTQHGILPERVLQLRPSAPITAIAMESAWGLLAVGTCHGLVVFDYLLHKVALVKCTVNPTDLANTGAGIQRKRTLAKSLRDSFRRLRSKR--GSKRGKKDGNKADGAASPGGVRSVGY--EASPQTRLIDEQRVDEDMLSMVRCIYFGETFLGDGGHRTATMWAGTNAGYIYVYSLIIPPK----DERHTTEVKTEVGKELKLKHHAPVVNIFVVDKNGVPVCSVSEQEAGRTQKSDMSGGHSVLISSEEQFKVFTLPTLRPRNKEKLTAVDGSRVRKLGIIDIPSKTPEGADIVHHCLMCLTNQGDVMIYSIPNLKQQMKKNVAKREDIRAISSLLFTHDGEGFYLKSTSELQRFSVLSSNKIVP 922
            M+K   RR+   P+++KL  +LF   KT EHG PN+PSA+A+D +L ++AIGT+SG +K+YG PGVE       AAT  + Q+ FL GQGR++S+    + ++LHLWEI +  G    LEE  +  L  R           L +++V  L  A +   +GTEG  ++ LD+ +  L +   +    V++S+P +    K    G VE+LQ H  DP K+LIGY +G++V+WNQ+    +  F+   ++ES+ W +     +S+H +GS +VW V       ++   ++TP+GPFPCKAI K+ W N       +IFSGG+PRASYGD+H VS+L   T+ V LDFTS++IDFF+++    E   D    L       + + +    G+     PYLA +HSS I+ + HV  +P  LWA +V AG++Q+    +S  SWP+ GGR L  E  +  +L+TGHEDGTV+FW+ +G++   +Y +ST+ LFQ+D +         ++DWPPF+KVG FDP++DDPR  VQK+ LC  T  ++V G+ GQ+++  L +   + +  +  ++++ + EGF WKGH  LS RT P+    G  P  ++Q  P A +TA+ + + W L+A GT HG  +FDY      L +CT++P D       + R ++L KSLR SFRR+R  R  G KR     +K   A +    ++  +  E +P  R I+ +  D+ +  +VRC+YF +TFL DG H   TMWAGTN+G ++ Y+L +P      ++R    V+  +GKE++L H APVV I V+D  G P+    E      Q  DM GGH+VLI+SEEQFKVFTLP +  + K KLTA +G RVRK+ +    S   E  D    CL CLTN GDV ++S+P L+ Q+  +  ++EDI  I+S +FT  G+GFYL S SE +RFS+ + N   P
Sbjct:    1 MMKFRFRRQGADPQREKLKQELFAFNKTVEHGFPNQPSALAFDPELRIMAIGTRSGAVKIYGAPGVEFTGLHRDAAT--VTQMHFLTGQGRLLSL---LDDSSLHLWEIVHHNGCAH-LEEALSFQLPSRPGFDGASAPLSLTRVTVVLLVAASDIAALGTEGSSVFFLDVTTLTLLEGQTLAPGEVLRSVPDDYRCGKAL--GPVESLQGHLRDPTKILIGYSRGLLVIWNQASQCVDHIFLGNQQLESLCWGRDSSTVVSSHSDGSYAVWSVDAGSFPTLQPTVATTPYGPFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETL-VTLDFTSRIIDFFTVHSTRPEDEFDDPQALAVLLEEELVVLDLQTPGWPAVPAPYLAPLHSSAITCSAHVASVPAKLWARIVSAGEQQSPQPVSSALSWPITGGRNLAQEPSQRGLLLTGHEDGTVRFWDASGVALRPLYKLSTAGLFQTDCEHADSLAQAAEDDWPPFRKVGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPVEQAVSVAIIDLLQDREGFTWKGHERLSPRTGPLPWPAGFQPRVLVQCLPPAAVTAVTLHTEWSLVAFGTSHGFGLFDYQRKSPVLARCTLHPNDSLAMEGPLSRVKSLKKSLRQSFRRIRKSRVSGKKRAANASSKLQEANAQLAEQACPHDVEMTPVQRRIEPRSADDSLSGVVRCLYFADTFLRDGAHHGPTMWAGTNSGSVFAYALEVPAAAVGGEKRPEQAVEAVLGKEVQLMHRAPVVAIAVLDGRGRPLPEPYEASRDLAQAPDMQGGHAVLIASEEQFKVFTLPKVSAKTKFKLTAHEGCRVRKVALATFASVACE--DYAETCLACLTNLGDVHVFSVPGLRPQVHYSCIRKEDISGIASCVFTRHGQGFYLISPSEFERFSLSARNITEP 945

The following BLAST results are available for this feature:

BLAST of TCONS_00025019-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00025019-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
L2GL1	0.000e+0	39.64	Lethal(2) giant larvae protein homolog 1 OS=Homo s...	[more]

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TCONS_00025019-protein (polypeptide) - C. hemisphaerica