TCONS_00025442-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025442-protein
Unique NameTCONS_00025442-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025442-protein ID=TCONS_00025442-protein|Name=TCONS_00025442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MTSAPGRHKSKPYQQTVDHKSLWSQWLAFRPRLWAILEKPFSSVYAQVSA
FISLVIILMSLTTFCAETVKYFEEEKHIFGQLEYFYCAFFTLELLLRLWC
CPSKKKYFKSAMTWIDIISTAQFYISFIADTHAFDVLFVTRLLRVFRLFR
FFKNLSGMQVIAQTLKASANELLLLCIIVFIPMVIFSTCVFYAEQGQNNT
KFPSIPETFWWAIITMTTVGYGDVTPDTLAGRIIGGLTACSGVLIVALPV
SVIGSNFSLYYSYAQARMRLPKRKSPALVSADKALIPNASSTKLPDGGGE
WDNKGSIAPSLQSVGTLVLNTTGFERTPLTSPVPTPDPTRMLKRERSGIR
RHAIQPSANPINSPIITPDGKPSKSSKTKGRRARKVSKAVKGKISEEQPD
GPEVPTSDSPEESRLSRCHKRSSLPIINNNNEKVDGLCNGHDQHRNSPEE
NSDEDISASLHRKITRVPRTRSLSEHRSPRIRNVIHGDQLMNYVPKKLSA
SEQKRRRKLTYVPNFHSSPTEDMTIDSMTEGSNNNTTERITPTPTPPWMA
RAAYERSLISPPLMEESVILMESVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014280XLOC_014280Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025442TCONS_00025442Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003971K_chnl_volt-dep_Kv9
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003971Potassium channel, voltage dependent, Kv9PRINTSPR01494KV9CHANNELcoord: 53..65
score: 35.58
coord: 241..259
score: 46.71
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 107..127
score: 28.13
coord: 202..224
score: 70.91
coord: 81..104
score: 39.65
coord: 40..68
score: 39.74
coord: 171..194
score: 42.31
coord: 231..257
score: 54.52
coord: 142..168
score: 38.03
NoneNo IPR availableGENE3D1.10.287.70coord: 171..221
e-value: 4.4E-19
score: 67.9
NoneNo IPR availableGENE3D1.20.120.350coord: 44..170
e-value: 3.5E-27
score: 94.3
NoneNo IPR availableGENE3D1.20.5.110coord: 223..259
e-value: 1.1E-10
score: 40.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..479
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..547
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 46..258
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 48..263
e-value: 7.6E-41
score: 139.8

Blast
[Close]
BLAST of TCONS_00025442-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 6.124e-56
Identity = 99/273 (36.26%), Postives = 160/273 (58.61%), Query Frame = 0 
Query:   29 FRPRLWAILEKPFSSVYAQVSAFISLVIILMSLTTFCAETVKYFEEEK----------HIFGQ-----------------LEYFYCAFFTLELLLRLWCCPSKKKYFKSAMTWIDIISTAQFYISFIAD-------------THAFDVLFVTRLLRVFRLFRFFKNLSGMQVIAQTLKASANELLLLCIIVFIPMVIFSTCVFYAEQGQNNTKFPSIPETFWWAIITMTTVGYGDVTPDTLAGRIIGGLTACSGVLIVALPVSVIGSNFSLYY 261
            F+ ++W + E P SS  A++ A +S+++IL+S+ +FC ET+  F +E           H +                   +E     +F+ E L+R + CPSK  +F + M  IDI++   ++I+   +               +  +L V RL+RVFR+F+  ++  G+Q++ QTLKAS  EL LL   +FI +++FS+ V++AE  +  ++FPSIP+ FWWA+++MTTVGYGD+ P T+ G+I+G L A +GVL +ALPV VI SNF+ +Y
Sbjct:  145 FQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
The following BLAST results are available for this feature:
BLAST of TCONS_00025442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA26.124e-5636.26Potassium voltage-gated channel subfamily A member... [more]
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