TCONS_00025875-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025875-protein
Unique NameTCONS_00025875-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025875-protein ID=TCONS_00025875-protein|Name=TCONS_00025875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp
MNFRQPPMGGGYGQMPSTDHGIQYQPNNDKFRMQNNNFPRRERGRSPGSS
DGRSSGSDISEKDWKCTVTVKNILTREPDTVLEESLYHEFKKYGEIVNII
IKVNSNQRYAYVQYAQSDQAQDATRSTGKLFMGQELKVAVKGSRNGAADT
ATGFDANATRTVFVGQLDKSVTHGELREIFERFGEVVDVDIKKMHTGITT
YSFVQYIDIQSAIVARQKMDRQLIRNNRIKVGFGRGTPTNSLWIGNLAAK
TTENDLMKYFASFGHVQQCLIDRKVWQALLRYRTIESCTKAFAEMHGKHV
NGSKIVVDYASPACRESYYNRMEKHGYLDRRQLERSPTPPDVHVNYPNAT
RTGGSISNKVYPNRVFDDKDRFSDNRYDRDQIRNRGSPIPRRRSPSPLAD
SYDSRKRKLSADIMANSDGESEKKKKKKKKKSKDEEEKRLRKERKKAEKA
KKKAEKKEKKLKKLRELEEKRAAEEKANTAPTLLNDRAQESDHKENDSAH
ENGGISDVSQVTEPNEGASELSEAEMTNEDKPKETSVVPDEKPPETTESV
IESGEIKDPEKEEREKKITEDSSDSSDSSSSSSDSDSDDSSDDDRSARKR
TSKTRSFEPKSYRQESDGRSDYREGSRESFRGSKYYTSRSSSQNDRSPRT
KSRSRSPYRREPSYDRSHDSPRYSRTESVRNIEKPKSSPPPSGTPGERAP
SRNADTLMDLLRRFPVMWQGLLGLKNETAAVQMHFLSGNLQLVDQSLPRS
AQPNEVPPPLRISQRMKLEPSQLEGVDKRIQVQYN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014548XLOC_014548Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025875TCONS_00025875Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012921SPOC_C
IPR016194SPOC-like_C_dom
IPR010912SPOC_met
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 423..478
NoneNo IPR availableGENE3D3.30.70.330coord: 23..149
e-value: 9.0E-12
score: 44.6
coord: 238..356
e-value: 8.2E-16
score: 57.7
NoneNo IPR availableGENE3D3.30.70.330coord: 150..237
e-value: 1.2E-16
score: 60.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..703
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 67..139
e-value: 4.1E-10
score: 49.6
coord: 241..308
e-value: 4.2E-11
score: 52.9
coord: 161..232
e-value: 3.9E-15
score: 66.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 162..230
e-value: 5.8E-12
score: 45.2
coord: 242..305
e-value: 1.5E-7
score: 31.0
coord: 78..137
e-value: 5.7E-9
score: 35.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 240..312
score: 13.038
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 160..236
score: 13.908
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 66..143
score: 11.025
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 159..312
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 19..139
IPR012921Spen paralogue and orthologue SPOC, C-terminalPFAMPF07744SPOCcoord: 712..781
e-value: 2.9E-13
score: 49.9
IPR016194SPOC-like, C-terminal domainGENE3D2.40.290.10coord: 704..785
e-value: 2.2E-22
score: 79.0
IPR016194SPOC-like, C-terminal domainSUPERFAMILY100939SPOC domain-likecoord: 708..783
IPR010912Spen paralogue/orthologue C-terminal, metazoaPROSITEPS50917SPOCcoord: 707..785
score: 21.203

Blast
[Close]
BLAST of TCONS_00025875-protein vs. Swiss-Prot (Human)
Match: MINT (Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.797e-57
Identity = 104/268 (38.81%), Postives = 164/268 (61.19%), Query Frame = 0 
Query:   68 VTVKNILTREPDTVLEESLYHEFKKYGEIVNIIIKVNSNQRYAYVQY-AQSDQAQDATRSTGKLFMGQELKV-AVKGSRNGAADTATGFD-------ANATRTVFVGQLDKSVTHGELREIFERFGEVVDVDIKKMHTGITTYSFVQYIDIQSAIVARQKMDRQLIRNNRIKVGFGRGTPTNSLWIGNLAAKTTENDLMKYFASFGHVQQCLIDRKVWQALLRYRTIESCTKAFAEMHGKHVNGSKIVVDYASPACRESYYNRMEKHG 326
            + V+N+  R  DT L++ L+HEFKK+G++ ++ I   S +RY  V +  Q DQ +  T S GKLF G +++V A  G    + +     D         ATRT+F+G L+K+ T+ +LR IF+RFGE+VD+DIKK++ G+  Y+F+QY DI S   A +KMD + + NNR+K+GFG+  PTN +W+  L++  ++  L ++F  +G V + + DR    AL+ Y  IE    A  E  G+ + G+KI VD+A+   + ++Y+ MEK G
Sbjct:  337 IKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVN-GVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSG 603

HSP 2 Score: 97.8265 bits (242), Expect = 1.149e-20
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 0 
Query:  707 LMDLLRRFPVMWQGLLGLKNETAAVQMHFLSGNLQLVDQSLPRSAQPNEVPPPLRISQRMKLEPSQLEGVDKRIQVQ 783
            ++ LL+++P++WQGLL LKN+TAAVQ+HF+SGN  L  +SLP S    E  PPLRI+QRM+LE +QLEGV +R+ V+
Sbjct: 3498 MVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLS----EGGPPLRIAQRMRLEATQLEGVARRMTVE 3570
The following BLAST results are available for this feature:
BLAST of TCONS_00025875-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MINT2.797e-5738.81Msx2-interacting protein OS=Homo sapiens GN=SPEN P... [more]
back to top