TCONS_00025929-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025929-protein
Unique NameTCONS_00025929-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025929-protein ID=TCONS_00025929-protein|Name=TCONS_00025929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
TMLYFELFSWFIFACKVLSTNGDDGVASSSLTKILKTSYDKRVKPFGRNG
TLDLEVQISVVAVGPINEKDFTFRLDYYLRQWWVDERLVFPEKGKITFGG
NPKDLIWLPDLFVRNSKEVKMHQSFQQSIRTTINHDGNVYMSARISSICS
CNMNLQNYPMDHQTCALSMESYAYQGNELNISWHQAPIEYKPENIQVEGY
KLTSIDASSDVTNYMTGEFFQLLHIYLHVERTVSYYIFRSYVPSSFLVIM
TWGTFWLPVNTYPARVXSSSFSKIFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014580XLOC_014580Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025929TCONS_00025929Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 105..116
score: 45.93
coord: 151..165
score: 45.31
coord: 227..239
score: 23.29
coord: 74..90
score: 36.47
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainGENE3D2.70.170.10coord: 23..236
e-value: 9.8E-48
score: 161.9
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 30..231
e-value: 3.9E-41
score: 140.8
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 30..231
NoneNo IPR availableGENE3D1.20.58.390coord: 237..270
e-value: 8.0E-7
score: 28.3
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 151..165
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 235..266

Blast
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BLAST of TCONS_00025929-protein vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.716e-39
Identity = 77/234 (32.91%), Postives = 127/234 (54.27%), Query Frame = 0 
Query:   37 TSYDKRVKPFGRNGTLDLEVQISVVAVGPINEKDFTFRLDYYLRQWWVDERLVFPEKGKITFGGNPK--DLIWLPDLFVRNSKEVKMHQSFQQSIRTTINHDGNVYMSARISSICSCNMNLQNYPMDHQTCALSMESYAYQGNELNISWH-QAPIEYKPENIQVEGYKLT-SIDASSDVTNYMTGEFFQLLHIYLHVERTVSYYIFRSYVPSSFLVIMTWGTFWLPVNTYPARV 266
            + YD R++P  +   +++   I + + G I E    +R++ +LRQ W D RL + E    +   +P   D IW PDLF  N K    H+    +    I  +GNV  S R++   SC M+L+N+PMD QTC + +ES+ Y  N+L   W  +AP++   E + +  + L    D      +Y TG+ F  + +  H+ER + YY+ + Y+PS  +VI++W +FW+ ++  PARV
Sbjct:   55 SGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA-EGLTLPQFLLKEEKDLRYCTKHYNTGK-FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARV 286
The following BLAST results are available for this feature:
BLAST of TCONS_00025929-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA31.716e-3932.91Glycine receptor subunit alpha-3 OS=Homo sapiens G... [more]
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