TCONS_00026083-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026083-protein
Unique NameTCONS_00026083-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026083-protein ID=TCONS_00026083-protein|Name=TCONS_00026083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIV
QKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQ
LQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSIKLEELLDWEILILNKL
RWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTN
LNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVE
CRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDVAF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014670XLOC_014670Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026083TCONS_00026083Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR004367Cyclin_C-dom
IPR006671Cyclin_N
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 64..148
e-value: 8.2E-20
score: 81.8
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 149..300
e-value: 1.6E-21
score: 76.3
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 42..148
e-value: 4.9E-35
score: 119.3
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 156..261
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 27..154
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 157..288
e-value: 3.3E-9
score: 46.6
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 158..280
e-value: 8.2E-12
score: 45.2
NoneNo IPR availablePIRSFPIRSF001771Cyclin_A_B_D_Ecoord: 31..292
e-value: 1.0E-33
score: 115.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..300
NoneNo IPR availableCDDcd00043CYCLINcoord: 58..147
e-value: 2.38832E-18
score: 76.5084
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 32..154
e-value: 1.3E-35
score: 121.9
IPR006671Cyclin, N-terminalPROSITEPS00292CYCLINScoord: 59..90

Blast
[Close]
BLAST of TCONS_00026083-protein vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 4.316e-91
Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 0 
Query:    1 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSIKLEELLDWEILILNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 298
            M+L+C EG+  +   R   D  L+ D RVL  LL++E+ Y+PR  YF+ VQ+EIKP MRK++  WM EVCEE +CE++VFPLA+N LDR+LS V  RK QLQLLG  CM +ASKL+ET PLT EKL IYTD+++   +L DWE+L+L KL+WD+AA++ +DFL F+  R+++P    +  + KH  T++ALC  D+ F  +  PSMIA  +I A  Q L    G+   S  EL + L  ITG + DCL  C+++++  +R  +   + +++  +    +      P Q  TPTD+  +
Sbjct:    1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
BLAST of TCONS_00026083-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCND34.316e-9143.62G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 P... [more]
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