TCONS_00026962-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026962-protein
Unique NameTCONS_00026962-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026962-protein ID=TCONS_00026962-protein|Name=TCONS_00026962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1611bp
QISKLVECLGRLSVAMGQTTVILDKPPVKVETKLFALALEKHIGTKYAGA
DLNTNDGSPYNFKLPSNTTDFLLPEYWSKNVVAKQLNFAKNIFSTDPIRS
KFMKTKINGLEFQNNGQQIAIKNITKAITIAVESQPTDSSKSTRVSLYLP
SYPIFETVRLQNLDCPLVVTVKYLQDSSNEQQSTNPCQERINEDQEQPEL
TVLMQYGQSPTTKEYDYKALFPAPDGVVGQATNDNNIVRLTENTFLVKNL
RMLKHINQASNSNNTIYFSFTYNGTLPNARVITNEFNYDTIEFRSAYNYS
LDVTCRSCMYWNKEKRLWDDSGVEIDVEMTTETRTYCKATHLTSFGGLYI
APNPIPTPSFQSLKEGYTLLVTVLSLLLVYILAIVFVRKRDRNFADKEKI
YYLQDNNKSDQYFYEIIVRTGIQRDAGTNSNVYLQLVGFKAQSTVHQLVD
EDREVFQRASTDVFVLSSDRSLGDITCARLWHDNEEGDWYLRDINVVDLQ
TNKKYKFVANRWVSIDKTNSTLYYTLTPHNEEELKSFLYIFKSKSMNDFS
DRHLWFSIFNHPSKSNFTSCQRLSVAVSALFCVMTSSLMYFQNTPRTSIA
VENSGVLHFTIEKLLIAFICMMVSVPINVLLVGLFRVIRPKSQKKRNSED
ARTGFSLPHWCIYPTWFLCIVSILGSGTLVTFYGMAFGNQRSLDWLLSTL
LSFVQDIFLFQPAQIFLAALISALLSRRFDDGVVEKFNLTQIWKRERRKS
RAANSDVIDLPTSFVAGSTFDPPGEKEMESMRHESYKRQQFAATLRGIVY
QICFAFVVFIIANDARRSSAYHLATGIRKMLKAHKNDIANYTAFEKVHSP
RDVWPWLSNVILPEVFPEPWFSSPCKNGNSHQRRRRSATTTFSRNEDPGI
RDFPGRLYLNDLYSKVVTGMRLRHVRTENTSCVQFSLLNNNTNFKHCIGV
FNLKNTEKGSYGTGWSKLTGEQKQHDHPTELPWIYKTSEELGSFPILATQ
HLYPGGGYAVQLFPKSNWKSILGELKDHLWLDRYSRALILELDVYNAAEK
QFISVRMVLEIEPFGGIIPFITVTPVTLDNDSFWLICNKVAFFFLFMLFA
YREYREILASGFSYLKSFWNIIEICLLAFICLAIYLEFTVEKYRSELTTR
VNHRKPYTFIDFQVLAYTGLLFQITIGFVSFFVMIKVIRLLRFNRRISIL
TKTLKRALPDLAAMGLHLLIIYIASVIFSHMLLGVHLHQFSDFWKTAGTI
ISIMLNKFKVSEIIETKPILGRIGFFVFTVLVNFIVLNILISILNDSIAE
TENELDSCEQERKDEFLEYVKEIFTDLIRCVFRFRCCCRRSNKNPPSKTT
SPTKQTPITPPPPSRVVQVKEFKEHELTPDEKRHFFFHSSPTPTHRPLRD
EKQQKKKQAVNFQDEIQIMDYEETSIHSFKIEDDRDDENVIDYQQSPPQG
KSDKALVVSKYQHVTSYQGVASYQGVAKYQHVSSYQEMVNYHHADDSDLE
IEEINCHQQQHQHLPEISGEKAVTRYEDVTRYHGVTIHQHVSDSNAKIEE
IKSDRQQRHQPEISDQELITKYQHAIRCLKNMHQSDVDFDAVWQKRMIGL
LHGMMEDCLCE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015138XLOC_015138Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026962TCONS_00026962Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003915PKD_2
IPR001024PLAT/LH2_dom
IPR013122PKD1_2_channel
IPR000203GPS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1291..1318
NoneNo IPR availableGENE3D1.20.120.350coord: 1265..1446
e-value: 0.11
score: 11.2
NoneNo IPR availableGENE3D1.20.120.350coord: 777..1214
e-value: 3.1E-6
score: 26.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1342..1364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 876..897
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1384..1404
IPR003915Polycystic kidney disease type 2 proteinPRINTSPR01433POLYCYSTIN2coord: 1119..1139
score: 16.19
coord: 1213..1234
score: 18.18
coord: 1274..1295
score: 35.45
coord: 1166..1191
score: 26.15
coord: 1037..1059
score: 33.91
IPR001024PLAT/LH2 domainSMARTSM00308LH2_4coord: 412..525
e-value: 8.1E-5
score: 24.4
IPR001024PLAT/LH2 domainGENE3D2.60.60.20coord: 412..537
e-value: 8.9E-29
score: 99.6
IPR001024PLAT/LH2 domainPFAMPF01477PLATcoord: 414..519
e-value: 8.8E-17
score: 61.7
IPR001024PLAT/LH2 domainPROSITEPS50095PLATcoord: 412..527
score: 35.526
IPR001024PLAT/LH2 domainSUPERFAMILY49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 410..518
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 843..1300
e-value: 1.1E-75
score: 254.9
IPR000203GPS motifPFAMPF01825GPScoord: 307..346
e-value: 4.9E-7
score: 30.2
IPR000203GPS motifPROSITEPS50221GPScoord: 305..354
score: 9.457

Blast
BLAST of TCONS_00026962-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 205.297 bits (521), Expect = 7.413e-53
Identity = 165/618 (26.70%), Postives = 290/618 (46.93%), Query Frame = 0
Query:   46 KYAGADLNTNDGSPYNFKLPSNTTDFLLPEYWSKNVVAKQLNFAKNIFSTDPIRSKF-MKTKINGLEFQN-NGQQIAIKNITKAITIAVESQPTDSSKSTRVSLYLPSYPIFETVRLQNLDCPLVVTVKYLQDSSNEQQSTNPCQERINEDQEQPELTVLMQYGQSPTTKEYDYKA-LFP--APDGVVGQATNDNNIVRLTENTFLVKNLRMLKHINQASNSNNTIYFSFTYNGTLPNARVITNEFNYDTIEFRSAYNYSLDVTC--RSCMYWNKEKRLWDDSGVEIDVEMTTETRTYCKATHLTSFGGLY-IAPNPI----PTPSFQSLKEGYTLLVTVLSLLLVYILAIVFVRKRDRNFADKEKIYYLQDNNKSDQYFYEIIVRTGIQRDAGTNSNVYLQLVGFKAQSTVHQLVDEDREVFQRASTDVFVLSSDRSLGDITCARLWHDNEEGD---WYLRDINVVDLQTNKKYKFVANRWVSIDKTNSTLYYTLTPHNEEELKSFLYIFKSKSMNDFSDRHLWFSIFNHPSKSNFTSCQRLSVAVSALFCVMTSSLMYFQNTPRTSIAVENSGVLHFTIEKLLIAFICMMVSVPINVLLVGLFRVIRPKSQKKRNS 648
             + G+ L  +      F LP+ ++   L E   + V  K ++F K+ F   P RS F +   + GL   + +GQ I +KN+++ I I +       S+ T ++L   + P    V + + +  L + + +  D +                     LT+ + YG  P    YD +  L P  APD +     +  ++ R  E  +                          Y   +P +           +E     + ++ +T     C++W++ +  WDDSG ++    T+  +T+C   HLT FG  + +  N I        F + ++   ++ TV  L +VY+L +++ R++D     K K+  L+DN+   QY Y + V TG +R A T+S V + L G   +   H L D D  VF+R + D F+LS+   LG++   RLWHDN  GD   WY+  + V DL  ++K+ F+ N W+SI+  +  L        E++ K F ++F  K+   F D H+W+SIF+  ++S+FT  QR+S   S L C M +S+M++      +    + G + FT ++++I     ++  PIN+L+V +F+  RP+  K++N+
Sbjct: 1078 SWQGSSLRPDAADSATFMLPAASSLSSL-EGGQEPVDIKIMSFPKSPF---PARSHFDVSGTVGGLRVTSPSGQLIPVKNLSENIEILLPRHSQRHSQPTVLNL---TSPEALWVNVTSGEATLGIQLHWRPDIA---------------------LTLSLGYGYHPNKSSYDAQTHLVPMVAPDELPTWILSPQDL-RFGEGVY--------------------------YLTVVPES----------DLEPAPGRDLTVGITTFLSHCVFWDEVQETWDDSGCQVG-PRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDN-SGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQNT 1628          

HSP 2 Score: 199.519 bits (506), Expect = 4.283e-51
Identity = 159/663 (23.98%), Postives = 281/663 (42.38%), Query Frame = 0
Query:  656 SLPHWCIYPTWFLCIVSILGSGTLVTFYGMAFGNQRSLDWLLSTLLSFVQDIFLFQPAQIFLAALISALLSRRFDD---------GVVEKFNLTQIWKRERRKSRAANSDVIDLPTSFVAGSTFDPPGEKEMESMRHESYKRQQFAATLRGIVYQICFAFVVFIIANDARRSSAYHLATGIRKMLKAHKNDIANYTAFEKVHSPRDVWPWLSNVILPEVFPEPWFSSPCKNGNSHQRRRRSATTTFSRNEDPGIRDFPGRLYLNDLYSKVVTGMRLRHVRTENTSCVQFSLLNNNTNFKHCIGVFNLKNTEKGSYGTGWSKLTGEQKQHDHPTELPWIYKTSEELGSFPILATQHLYPGGGYAVQLFP-KSNWKSILGELKDHLWLDRYSRALILELDVYNAAEKQFISVRMVLEIEPFGGIIPFITVTPVTL----DNDSFWLICNKVAFFFLFMLFAYREYREILASGFSYLKSFWNIIE--ICLLAFICLAIYLEFTVEKYRSELTTRVNHRKPYTFIDFQVLAYTGLLFQITIGFVSFFVMIKVIRLLRFNRRISILTKTLKRALPDLAAMGLHLLIIYIASVIFSHMLLGVHLHQFSDFWKTAGTIISIMLNKFKVSEIIETKPILGRIGFFVFTVLVNFIVLNILISILNDSIAETE 1302
             LP WCI   W L   +   +      YG+ +G   SL WL+S  +SFV+ +F+ QP ++   A   AL+ +R DD         G +   +   +++  R  SR    DV            + PP    +E M+    K Q+  A +R I+  + F +++ ++A   R  SAYHL    R +  +     +    F      R+ + W +  ++  ++  P                                  PG  ++ D  SK+V   ++R VR + +SC              C   ++L   +   YG GW+  T  +          W Y++ ++   +PI     +Y GGGY V L   +     IL  L D+ WLD  +RA+ +E  VYNA    F  V + LE    G       +  + L    D    +++  ++ +F   + +   + + +    + Y  S WN++E  I L ++  LA++++  V   R     R NHR+    I F   A         I F+     +K+  LLR N +++++T  L+RA  D++   + +L + +A  I S+++ G  L  +   +  A T++S+ L  F   E+++  P+LG        V + F+VLN+ IS++  + +E +
Sbjct: 1816 GLPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLKRVDDEEDTVAPLPGHLLGPDPYALFRARRNSSR----DV------------YQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLN---RHLQHSFTRGFSGVLGF------REFFKWANTTLVSNLYGHP----------------------------------PG--FITDGNSKLVGSAQIRQVRVQESSCPLAQ--QPQAYLNGCRAPYSLDAEDMADYGEGWNATTLSE----------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCR-NHRE--EGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQ 2402          
The following BLAST results are available for this feature:
BLAST of TCONS_00026962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L27.413e-5326.70Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
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