TCONS_00027072-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027072-protein
Unique NameTCONS_00027072-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027072-protein ID=TCONS_00027072-protein|Name=TCONS_00027072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MTSSLDYSINSSSINKETSNLKNHSKLLQLGLSNSKLEQPLLNDFLRRLH
RSKLRRLLYCEYKSGGFIVTEQIRGAVDSIISTDKDNSLDSRLKSVPMHQ
VFLCKCGWLLFNPSTLPCGHTMCKHCADENLFCIYCGHTIDDVSSPNLFL
VHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSA
FQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNE
AIDAFQLCLELEPEDMALCSLVINKLDSILSLPDTGSKLSDSDSSSDEGV
GGKRSKLDTSTNENTEPSCRHASSSSSNTSSTTPSNTQANKSYTDKIDVE
RRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFEC
KLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLK
PVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSI
AFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCVPQGDDGXSPAPGSLG
CVSLRVTMVSLKWVRYAKLPRYKICRMDGMS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015217XLOC_015217Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027072TCONS_00027072Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 164..197
e-value: 280.0
score: 2.3
coord: 232..265
e-value: 8.2E-4
score: 28.7
coord: 198..231
e-value: 0.5
score: 19.4
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 234..265
e-value: 0.0016
score: 18.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 198..231
score: 5.576
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 232..265
score: 9.942
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 101..136
e-value: 2.0
score: 8.6
coord: 400..437
e-value: 3.6E-7
score: 39.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 400..438
score: 12.666
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 399..441
e-value: 3.33239E-8
score: 49.3664
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 394..483
e-value: 8.5E-17
score: 60.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 74..163
e-value: 6.2E-6
score: 25.3
NoneNo IPR availableGENE3D2.30.130.40coord: 484..562
e-value: 1.1E-8
score: 34.2
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 399..437
e-value: 2.7E-10
score: 39.8
NoneNo IPR availableGENE3D1.25.40.120coord: 164..386
e-value: 1.6E-16
score: 59.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 390..442
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 118..127
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 415..424
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 164..265
score: 14.515
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 166..268
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 492..552

Blast
[Close]
BLAST of TCONS_00027072-protein vs. Swiss-Prot (Human)
Match: LONF3 (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.827e-62
Identity = 141/460 (30.65%), Postives = 220/460 (47.83%), Query Frame = 0 
Query:  102 FLC-KCGWLLFNPSTLPCGHTMCKHCADE----NLFCIYCGHTIDDV--------------SSP------NLFLVHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSAFQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNEAIDAFQLCLELEPED-MALCSLVINKLDSILSLPDTGSKLSDSDSSSDEGVGGKRSKLDTSTNENTEPSCRHASSSSSNTSSTTPSNTQANKSYTDKIDVERRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFECKLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLKPVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSIAFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCV 535
            F C KC   L +P +L CGHT CK C +     +  C  CG  +  +                P      N+ L  LL   FPG  ++SQ + +   L      E AL + +  + +  +D+  +  RS+IY  LE++++AL DA  +C+L     K+ F +    + LGK+ EA+  F  C+ L+ ++  A C    + L+           L    S  +    G  S L        +    H             ++ +A  S T K   ++RK+ C      +T   N  A+K +      ++    +P       D EC LC  L ++P+TT CGH FC  CL R LDHN  CP+C+  L+  L++       ++E++++ F  +E  +RR+ Y   ME L+ + K+    +PIFVC++A+P+V CPLHIFEP  RLMIR CIE+G+R+FGMC+
Sbjct:  156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARCEAQRDNLE-----------LPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKAASSKTGKCQEKKRKH-CQIESQEETGMPN-KASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKN----VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCL 598
The following BLAST results are available for this feature:
BLAST of TCONS_00027072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LONF31.827e-6230.65LON peptidase N-terminal domain and RING finger pr... [more]
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