TCONS_00027114-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027114-protein
Unique NameTCONS_00027114-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1356

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027114-protein ID=TCONS_00027114-protein|Name=TCONS_00027114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1356bp
HEKKRNYHSQSKEKINENKRNYRSQNKEKIKETNRIYCAQNKAKVNEKNK
IYHQNNRDSVGERKKSFYQKNNPTANKDKKNDLVSKFLKLIYEGPFYICV
CCNRCLYRQTVVKYSPEKYDTPQELYYSEVFSFDGQLYICKTCHSKLKKN
ELPCQSVKNKLGLDELPAEFHTLRRLEKILISRRILFKKIAIMPKGQFPK
LKGSICNVPIDVEDIANTLPRRANDNGLVIVKLKRKLEYKGHVVFEPIRP
DFIQRVLNYFKENNPLYQDIEVDVSNISNDETMIQNAADLNDEANSNENN
LSDENVFSDNNREPDEPQNNASDSEELETTDNPLDDHRSNANETTLMPHT
PSDAEVDNEILSLAPGQGKKPISILNDENCEMLAHPHLFPKGNFGYKVER
DVKLSPSKYFNQRLLNYTQKFASDPDYIFFANFVTQQVSLTNQINVAMRK
VAGSNLNAGMLSQNFKETVRQFIANDKAFAFMSTVKGTPAYWKKFQQEVL
AMVKQLGPPTFFQTLSCADLRWNELISIIYKLKGQNVTNEFIENLSYNER
CDLLNSNPVLVARHFQYRVEVFFKTIVLDGPLGKTTFYAIRVEFQVRGSP
HIHSFLWILNAPVLTKETKAEYIVFIDKIIKVYLPSVEEDPELFNLVKTY
QLHRHSKTCRKYRNTPCRFYFGKFFSEKTIVSEPLPQELPHDEREAILAL
RKEVLTKVKTYINENLNPDKRNFFNPDGENYNPVPTINEVLAELDIPKED
YEYALSVSEDEDFHIYLKRDTNACFVNNYFTEGLKAWQANLDIQPVFNYY
KAATYMCAYLSKTEDEISHAMTQAVKDAFENGGDKYEQMKSVAHAYVSKR
EVSVQEAVYLSMPQLWLRKLYPGVTFANTNVPEKRFRMCLSEDDINELPE
DSTSIFKINMLDRYCDRPTDRVGPNKPIAEMCYAEFLRFYSVVYKECDEN
DCQPDELEDNLIESNHPSSNYPKIVKLCSIKGKLKCRKVPLVLRLHQPNR
NKYPEDYAHHLLMLYLPFFDENELLSQEHNSYTAKLLEPGVIERIERNRA
LIQPYAGLVDDALERYRNDLILNMNDFEQQENDETNAELQSRPNNNEESD
DENNNDTHVRASIPMESVLLPDNEVNARIRSLNYQQREVFDVVHKWGRDF
VKNLSSKVPKCIEPFHIFLTGGGGVGKSHLLTTIYHSLSNLLMYRGGEPT
KERILVLAPTGVAAINVNGTTIHSGLIIPTPDFLPLNASSKQNLQKKLAC
VEVIMIDEISMVSSRLFRNIDERLRKIFEVDKPFAGKSVLLCGDLFQLPP
VFKDFIYKPDCSTVHGIIGFELWRKFQIAELTEIMRQRDDIDFIDLLNQI
RLGEXV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015237XLOC_015237Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027114TCONS_00027114Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR025476Helitron_helicase-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 284..304
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableGENE3D3.40.50.300coord: 1053..1341
e-value: 9.1E-18
score: 63.8
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 1163..1354
e-value: 1.5E-31
score: 109.8
IPR025476Helitron helicase-like domainPFAMPF14214Helitron_like_Ncoord: 409..604
e-value: 1.2E-34
score: 120.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1128..1301
coord: 1060..1088
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1280..1353

Blast
[Close]
BLAST of TCONS_00027114-protein vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.466e-18
Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 0 
Query: 1167 IFLTGGGGVGKSHLLTTIYHSLSNLLMYRGGEPTKERILVLAPTGVAAINVNGTTIHSGLIIPT---PDFLPLNASSKQNLQKKLACVEVIMIDEISMVSSRLFRNIDERLRKIFEVDKPFAGKSVLLCGDLFQLPPVFKD-----FIYKPDCSTVHGIIGFELWRKF--QIAELTEIMRQRDDIDFIDLLNQIRLG 1353
            IF TG  G GKS+LL  I  SL          PT    +  A TGVAA ++ GTT+H+   I +   P    +  + +  +++     + ++IDEISMV + LF  ++   R + + +KPF G  +++CGD  QLPPV K      F ++            + W++      ELT++ RQ D   FI LL  +RLG
Sbjct:  224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQ-----------SKSWKRCVPVTLELTKVWRQADQT-FISLLQAVRLG 397
The following BLAST results are available for this feature:
BLAST of TCONS_00027114-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIF11.466e-1832.99ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN... [more]
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