TCONS_00027353-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027353-protein
Unique Name	TCONS_00027353-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	662

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027353-protein ID=TCONS_00027353-protein|Name=TCONS_00027353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MRNTAVRLKWKPLTILVILSILLLFTAIKLYTGIYTEQSPAEGGIVINGV
DDSVKAHPKFQKNIGDDAQHNIQNNVENLVQDPKNMALHEDPKYIIWDEP
QGDSPHDGPGENGVGVKTSPQEHSKVEHSYQLYGFNQYVSDQISLHRSLS
NPRPKQCQSKKYQSKXLFFDLSQRCQSKKYQPKLPKVSVIIIFHNEGWST
LLRTVHSVLDRSPKQLLHEIVLCDDFSAKEHLKEKLENYIKDYPKVKLVR
TKQREGLIRARVYGADHSTGEILLFLDSHCEANSGWLPPLLSEIERDYRT
VVCPTVDYIDHVDFHYRGVDPYIRGTFNWRFDYKERPITQEMKKARKDPT
KGVRSPVMAGGLFAISRKFWEELGKYDPSMYVWGGEQYEISFKLWMCGGR
MFNIPCSRVGHVYRDKVPYKSNKLNAALINFKRVAEVWMDGFKDFLYHYR
EDIGAQDHGDVSERLQLRKNLKCKDFEWYLSNVVNDTLRTRYEPNRAFGK
IKSVSTNQCINFNKRSKRKNWPLVITECGEDETDKDFLIYWTYIYELRYG
LTELCMEGDSQKPTQVYVEHCHETQGNQAFLFDIMTSQIVHRETNTCLQA
PSKDAQEKTISLVKCDSTNKAQKWDMSLREIMGPVPQWAKVADNFYKKYK
GVKHWKVERGSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015389	XLOC_015389	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027353	TCONS_00027353	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000772	Ricin_B_lectin
IPR029044	Nucleotide-diphossugar_trans
IPR001173	Glyco_trans_2-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	SMART	SM00458	ricin_3	coord: 498..627 e-value: 7.7E-8 score: 42.0
IPR000772	Ricin B, lectin domain	PFAM	PF00652	Ricin_B_lectin	coord: 498..624 e-value: 1.9E-18 score: 66.9
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 484..627 score: 14.752
IPR000772	Ricin B, lectin domain	SUPERFAMILY	50370	Ricin B-like lectins	coord: 493..626
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 115..450 e-value: 1.2E-57 score: 195.1
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 173..485
IPR001173	Glycosyltransferase 2-like	PFAM	PF00535	Glycos_transf_2	coord: 188..364 e-value: 6.6E-34 score: 117.1
None	No IPR available	GENE3D	2.80.10.50		coord: 451..627 e-value: 1.1E-19 score: 70.5
None	No IPR available	CDD	cd02510	pp-GalNAc-T	coord: 188..483 e-value: 1.39015E-162 score: 470.919
None	No IPR available	CDD	cd00161	RICIN	coord: 499..626 e-value: 1.12618E-10 score: 58.671

Blast

[Close]

BLAST of TCONS_00027353-protein vs. Swiss-Prot (Human)
Match: GLTL6 (Polypeptide N-acetylgalactosaminyltransferase-like 6 OS=Homo sapiens GN=GALNTL6 PE=2 SV=2)

HSP 1 Score: 415.616 bits (1067), Expect = 1.438e-137
Identity = 219/536 (40.86%), Postives = 323/536 (60.26%), Query Frame = 0

Query:  101 QGDSPHDGPGENGVGVKTSPQEHSKVEHSYQLYGFNQYVSDQISLHRSLSNPRPKQCQSKKYQSKXLFFDLSQRCQSKKYQPKLPKVSVIIIFHNEGWSTLLRTVHSVLDRSPKQLLHEIVLCDDFSAKEHLKEKLENYIKDYPKVKLVRTKQREGLIRARVYGADHSTGEILLFLDSHCEANSGWLPPLLSEIERDYRTVVCPTVDYIDHVDFHYRG-VDPYIRGTFNWRFDYKERPITQEMKKARKDPTKGVRSPVMAGGLFAISRKFWEELGKYDPSMYVWGGEQYEISFKLWMCGGRMFNIPCSRVGHVYRDKVPYKSNKLNAALINFKRVAEVWMDGFKDFLYHYREDIGAQDHGDVSERLQLRKNLKCKDFEWYLSNVVNDTLR---TRYEPNRAFGKIKSVSTNQCINFNKRSKRKNWPLVITECGEDETDKDF----LIYWTYIYELRYG----LTELCMEGDSQKPTQVYVEHCHETQGNQAFLFDIMTSQIVHRETNTCLQAPSKDAQEKTISLVKCDSTNKAQKW 624
            Q ++   G GE+G     + ++H   + +Y+  GFN +VS+ I+L RSL + R   C+ K Y  +                  LP  S+II FHNEGW++LLRT+HS+++R+P  L+ EI+L DDFS +EHLK+KLE Y+  + KV++VRTK+REGLIR R+ GA  + GE+L FLDSHCE N  WLPPLL++I  +++T+VCP +D IDH  F Y       +RG F+W   YK  PI  E+++A  DP+    SPVMAGGLFA+ RK++ ELG YDP + +WGGEQYEISFK+WMCGG MF++PCSRVGH+YR  VPYK     +   N KRVAE WMD F +++Y  R +      GD+S + +LRK LKCKDF+W+++ V  D  +       P  A+G+I++V+ N C++    +      L I  C +D +++ +    L  + +  ++R G      + C +  S   + V +  CH  +GNQ + +      + H  +N+C+     +  EK I + +CD  ++ Q+W
Sbjct:   76 QKEAMRSGKGEHGKPYPLTEEDHD--DSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMYLER------------------LPNTSIIIPFHNEGWTSLLRTIHSIINRTPGSLIAEIILVDDFSEREHLKDKLEEYMARFSKVRIVRTKKREGLIRTRLLGASMARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAGDAMRGAFDWEMYYKRIPIPPELQRA--DPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKELRKQLKCKDFKWFMAAVAWDVPKYYPPVEPPPAAWGEIRNVAANLCVDSKHGATGTELRLDI--CVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKFCFDAISHN-SPVTLYDCHGMKGNQLWGYR-KDRTLFHPVSNSCMDC---NPAEKKIFMARCDPLSETQQW 582

The following BLAST results are available for this feature:

BLAST of TCONS_00027353-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027353-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLTL6	1.438e-137	40.86	Polypeptide N-acetylgalactosaminyltransferase-like...	[more]

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TCONS_00027353-protein (polypeptide) - C. hemisphaerica