TCONS_00027362-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027362-protein
Unique NameTCONS_00027362-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027362-protein ID=TCONS_00027362-protein|Name=TCONS_00027362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=903bp
MSDSEGEQTPKAMMKSVVQMKKDEYRHSNAESESENDEDSRERDWRKRTD
HNTREEYGAEKKKRYSEEEEDTSEERKRRCSDSDDVSDDEQEDKDGDRYS
DDEERAEAQIKEKTEAKEKEAAKLKRREERFRAKEGGDDRKRKADSEKSP
NVDNDKPAAEPVKKKEKKEKSIEDMFTKAGGAYIPPSKLREMQASITDKT
SAAYQRMSWEALKKSINGLVNKVNISNLGFVVGEILHENIIRGRGVLCQS
IMRAQVASPTFTHVYAALVSIINTKFPKIGELLIRRLIIQFRKSFKRNDK
NVCINTVKFIAHLVNQEVVHELLALEVLSLLLQNPSGDSCEVAISFLKEA
GQKLTELSPRGINAVFDTLRRILHDSDTDRRTQYTIEVMFAVRKDGFKEY
PIIMEGLDLVEEDDQVTHLIRLEEKITGDDLLNVFKVDPNFAENEEKYRQ
IKSDLLGSGDEDSDEEGSGDESGSDDDSDEDDQEQEKPETEKMEIIDKTE
TNLVALRRLIYLTIQSSLDYEECAHKMMKLNIKPGQEHEFCFMVVECCSQ
QRSYEKFFGLLGQRFCLLRKEFMEQYMVIFKEQYEACHQLETNKLRNTAK
LFGHLLHSDAMPWTVLAAIQLNEDDTTSSSRIFIKILFQDLVEYLGIKKL
KLRINDPIIASYVEGVFPRDDPRNTRFSINFFTAIGLGGLTDELRAHLKT
MPKVPVVQQQQQAEEEDSSSSSSSDSDSSSDSDSSSSSDESSGDDRRQRK
KTKDNKRRKDSEREREVEKTRRRESRRNGSTERSKRRESHDRSKQRDSPD
RPRRRDSPDNRQRRRESPDERSRHRESQDRSRKRVESPERSHRQRESPER
TRRRDSPDRKSRNEHSRKHHSPDGKKNKDSYKSEKRYQKYSSRHSNRSLS
RER
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015397XLOC_015397Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027362TCONS_00027362Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR003891Initiation_fac_eIF4g_MI
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..134
NoneNo IPR availableGENE3D1.25.40.180coord: 483..664
e-value: 1.5E-38
score: 131.5
NoneNo IPR availableGENE3D1.25.40.180coord: 163..456
e-value: 4.7E-61
score: 205.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 704..903
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..495
IPR003890MIF4G-like, type 3SMARTSM00543if4_15coord: 213..396
e-value: 7.2E-37
score: 138.5
IPR003890MIF4G-like, type 3PFAMPF02854MIF4Gcoord: 217..395
e-value: 8.7E-13
score: 48.3
IPR003891Initiation factor eIF-4 gamma, MA3SMARTSM00544ma3_7coord: 506..612
e-value: 1.5E-26
score: 104.2
IPR003891Initiation factor eIF-4 gamma, MA3PFAMPF02847MA3coord: 506..612
e-value: 6.1E-24
score: 84.1
IPR003891Initiation factor eIF-4 gamma, MA3PROSITEPS51366MIcoord: 505..621
score: 21.147
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 201..443

Blast
[Close]
BLAST of TCONS_00027362-protein vs. Swiss-Prot (Human)
Match: CWC22 (Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3)

HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 339/550 (61.64%), Postives = 441/550 (80.18%), Query Frame = 0 
Query:  160 EPVKKKEKKEKSIEDMFTKAGGAYIPPSKLREMQASITDKTSAAYQRMSWEALKKSINGLVNKVNISNLGFVVGEILHENIIRGRGVLCQSIMRAQVASPTFTHVYAALVSIINTKFPKIGELLIRRLIIQFRKSFKRNDKNVCINTVKFIAHLVNQEVVHELLALEVLSLLLQNPSGDSCEVAISFLKEAGQKLTELSPRGINAVFDTLRRILHDSDTDRRTQYTIEVMFAVRKDGFKEYPIIMEGLDLVEEDDQVTHLIRLEEKITGDDLLNVFKVDPNFAENEEKYRQIKSDLLGSGDEDSDEEGSGDESGSDDDSDEDDQEQEKPETEKMEIIDKTETNLVALRRLIYLTIQSSLDYEECAHKMMKLNIKPGQEHEFCFMVVECCSQQRSYEKFFGLLGQRFCLLRKEFMEQYMVIFKEQYEACHQLETNKLRNTAKLFGHLLHSDAMPWTVLAAIQLNEDDTTSSSRIFIKILFQDLVEYLGIKKLKLRINDPIIASYVEGVFPRDDPRNTRFSINFFTAIGLGGLTDELRAHLKTMPKVPVVQQ 709
            EP  KK+K E  ++ + T+ GGAYIPP+KLR MQ  ITDK S AYQRMSWEALKKSINGL+NKVNISN+  ++ E+L ENI+RGRG+L +S+++AQ ASP FTHVYAALV+IIN+KFP+IGEL+++RLI+ FRK ++RNDK +C+   KF+AHL+NQ V HE+L LE+L+LLL+ P+ DS EVAI FLKE G KLT++SPRGINA+F+ LR ILH+S+ D+R QY IEVMFAVRKDGFK++PII+EGLDLVEEDDQ TH++ LE+    +D+LNVFK+DPNF ENEEKY+ IK ++L  GD DS+ +     S  +D+ +E+++ +E  E +K+ I DKTE NLV+ RR IYL IQSSLD+EECAHK++K+     Q  E C M+++CC+QQR+YEKFFGLL  RFC+L+KE+ME +  IFKEQY+  H+LETNKLRN AK+F HLL++D++PW+VL  I+L+E+ TTSSSRIF+KI FQ+L EY+G+ KL  R+ D  +  + EG+ PRD+PRNTRF+INFFT+IGLGGLTDELR HLK  PKV V Q+
Sbjct:  112 EPATKKKKDE--LDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAG-SSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQK 658
The following BLAST results are available for this feature:
BLAST of TCONS_00027362-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CWC220.000e+061.64Pre-mRNA-splicing factor CWC22 homolog OS=Homo sap... [more]
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