TCONS_00027479-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027479-protein
Unique NameTCONS_00027479-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027479-protein ID=TCONS_00027479-protein|Name=TCONS_00027479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
ISIQTFQVISLTKLRKEYKTYTLKRQLISSYNIFLCEEKIYHLVCKSLGK
ECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVGHGPSSSILVGQLNEH
KEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTSVALPLYQASPVAT
HDLSDVKVDVEEKQRKRKRKATPSIKNTNLDEVKSDDEGQNEDQNDKTED
VVLDGEKEKEVTTLANEDIEETNPAVEEQKTVVAKNEKHLRSSKVKKAKV
EEEKEVGKLVKKRKVKKVTTLSEEEEIESVPKTKKTPKKTLPAKKTGPRK
VKSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015484XLOC_015484Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027479TCONS_00027479Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028364Ribosomal_L1/biogenesis
IPR016095Ribosomal_L1_3-a/b-sand
IPR023674Ribosomal_L1-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 300..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..304
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 7..138
e-value: 2.0E-35
score: 122.3
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 7..142
e-value: 1.50451E-27
score: 105.729
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 2..76
e-value: 8.9E-16
score: 57.4
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 7..143

Blast
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BLAST of TCONS_00027479-protein vs. Swiss-Prot (Human)
Match: RL1D1 (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 5.141e-26
Identity = 50/140 (35.71%), Postives = 89/140 (63.57%), Query Frame = 0 
Query:    7 QVISLTKLRKEYKTYTLKRQLISSYNIFLCEEKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVG-HGPSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTSVALPLYQA 145
            Q+ISL  L+KEYK+Y  K +L+SS++ FL + +I  L+   +G+  Y+ KK PV V  ++K+L +EI  C+  T+L +   G  S+I +G +    E  ++EN++   + + +K+P KW ++K +++KT  S ALP++ +
Sbjct:  128 QIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIE-HIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266
The following BLAST results are available for this feature:
BLAST of TCONS_00027479-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL1D15.141e-2635.71Ribosomal L1 domain-containing protein 1 OS=Homo s... [more]
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