TCONS_00027899-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027899-protein
Unique NameTCONS_00027899-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027899-protein ID=TCONS_00027899-protein|Name=TCONS_00027899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
SMIIYPLELTQIHSQLQQNINMREYKLVVLGSGGVGKSALTVQFVQGIFV
EKYDPTIEDSYRKQVEVDGQQAMLEILDTAGTEQFTAMRDLYMKNGQGFV
LVYSITAQSTFNDLMDLRDQILRVKDTEDVPMVLVGNKCDLEDERVVGKD
NGQNLAKQFGNCTFLETSAKMKINVNEIFHDLVRQINQRQPVTRPGKKAS
GGKSKCVLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015769XLOC_015769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027899TCONS_00027899Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 128..141
score: 58.4
coord: 25..46
score: 49.47
coord: 65..87
score: 42.98
coord: 48..64
score: 35.81
coord: 164..186
score: 43.23
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 27..189
e-value: 1.2E-12
score: 42.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 22..189
e-value: 3.5E-120
score: 415.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 30..208
e-value: 0.0038
score: -3.3
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 25..189
e-value: 1.2E-37
score: 141.1
NoneNo IPR availableGENE3D3.40.50.300coord: 7..36
e-value: 0.24
score: 10.1
NoneNo IPR availableGENE3D3.40.50.300coord: 88..187
e-value: 1.9E-31
score: 107.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 37..87
e-value: 3.2E-23
score: 81.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..209
NoneNo IPR availableCDDcd04175Rap1coord: 24..188
e-value: 2.53507E-116
score: 330.248
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 26..187
e-value: 3.0E-57
score: 192.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 22..180
e-value: 2.6E-32
score: 109.8
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 14..209
score: 45.064
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 23..186

Blast
[Close]
BLAST of TCONS_00027899-protein vs. Swiss-Prot (Human)
Match: RAP1B (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 9.712e-115
Identity = 160/188 (85.11%), Postives = 171/188 (90.96%), Query Frame = 0 
Query:   22 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQAMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLMDLRDQILRVKDTEDVPMVLVGNKCDLEDERVVGKDNGQNLAKQFGNCTFLETSAKMKINVNEIFHDLVRQINQRQPVTRPGKKASGGKSKCVLL 209
            MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQ MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLR+QILRVKDT+DVPM+LVGNKCDLEDERVVGK+ GQNLA+Q+ NC FLE+SAK KINVNEIF+DLVRQIN++ PV  PGK  +  KS C LL
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPV--PGK--ARKKSSCQLL 184
The following BLAST results are available for this feature:
BLAST of TCONS_00027899-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAP1B9.712e-11585.11Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
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