TCONS_00027985-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027985-protein
Unique Name	TCONS_00027985-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	571

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027985-protein ID=TCONS_00027985-protein|Name=TCONS_00027985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
QITFDQTETSVRLRKWIISGTLKLSTKKMASKGQEMKDAVKSASYNMVLQ
VIFRLSTFSMNAIMLRYLSREVLGVMNVRLMLLYSTMLFISREAFRKACL
SQQSIKENVEQIKLKQMINLTWICSIVGLFSSFVLIFIWTSWLPQPKDDL
IWQYQMATILVAASCSFELAVEPFWILAQRNSLLSLKVMFEGVYLAVRCF
ISTFLVVFFPDKALVMYGVTFVLAAIVYSLCYAIYFWKYLTKDDSKKTKE
LSQFKQFADFLPNIRSKPLFHQDYVNLVTSFYKQSMLKQFLTEGERYIMT
IFGILTFSEQGVYDVINNLGSLAARFIFMPIEETYYTYFSKILLRGIRAN
EQKKESLDEAARSLFLVLKFVSLVGMIILVFGYSYSYLLLDLYGGKILSE
NEGPSLMKAYCLYVFIIAINGITECFMFATMSKEEVDKYNYKMLMFSVIF
LSASLLLTRYIGSIGFIFANCLNMFLRIIQSSLYINKYFQETEYRPLSAI
HPSFASLLTLLISFVVMVISEAIFCCNYGLLYQLCHVAVGGVCLLVVLGS
IYFTEHKFVDYLKSLIKQKQH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015835	XLOC_015835	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027985	TCONS_00027985	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007594	RFT1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005319	lipid transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005319	lipid transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007594	RFT1	PFAM	PF04506	Rft-1	coord: 40..562 e-value: 1.7E-139 score: 465.8

Blast

[Close]

BLAST of TCONS_00027985-protein vs. Swiss-Prot (Human)
Match: RFT1 (Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 9.555e-158
Identity = 244/537 (45.44%), Postives = 341/537 (63.50%), Query Frame = 0

Query:   29 MASKGQEMKDAVKSASYNMVLQVIFRLSTFSMNAIMLRYLSREVLGVMNVRLMLLYSTMLFISREAFRKACLSQQSIKENVEQIKLKQMINLTWICSIVGLFSSFVLIFIWTSWLPQPKDDLIWQYQMATILVAASCSFELAVEPFWILAQRNSLLSLKVMFEGVYLAVRCFISTFLVVFFPDKALVMYGVTFVLAAIVYSLCYAIYFWKYLTKDDSKKTKELSQFKQFADFLPNI-RSKPLFHQDYVNLVTSFYKQSMLKQFLTEGERYIMTIFGILTFSEQGVYDVINNLGSLAARFIFMPIEETYYTYFSKILLRGIRANEQKKESLDEAARSLFLVLKFVSLVGMIILVFGYSYSYLLLDLYGGKILSENEGPSLMKAYCLYVFIIAINGITECFMFATMSKEEVDKYNYKMLMFSVIFLSASLLLTRYIGSIGFIFANCLNMFLRIIQSSLYINKYFQETEYRPLSAIHPSFASLLTLLISFVVMVISEAIFCCNYGLLYQLCHVAVGGVCLLVVLGSIYFTEHKFVDYLKS 564
            M S+ + +  A + AS  ++LQV+FRL TF +NA +LR+LS+E++GV+NVRL LLYST LF++REAFR+ACLS  +      Q    Q +NL W+   +G+F S  L +IW   L  P  +++  Y    +L   S   EL  EPFW+LAQ +  + LKV+ E + + ++  ++ FLV++ P   L ++ +  +    V  LCY IYF K L   +S K + L    +  D LPNI R+    +     L  SF+KQS LKQ LTEGERY+MT   +L F +QGVYD++NNLGSL AR IF PIEE++Y +F+K+L RG  A  QK+E +  AA  L  +LK   L G+ I VFG++YS L LD+YGG +LS   GP L+++YCLYV ++AING+TECF FA MSKEEVD+YN+ ML  S  FL  S LLTR+ GS+GFI ANC NM +RI QS  +I++Y++ + +RPL+ +H S   L T  +S  V  +SE   CC  G   +L H+AVG  CL   LG+ + TE K + +L++
Sbjct:    1 MGSQ-EVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSGGT------QRDWSQTLNLLWLTVPLGVFWSLFLGWIWLQLLEVPDPNVVPHYATGVVLFGLSAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCYVIYFTKLLGSPESTKLQTLP-VSRITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPARLAHIAVGAFCLGATLGTAFLTETKLIHFLRT 529

The following BLAST results are available for this feature:

BLAST of TCONS_00027985-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RFT1	9.555e-158	45.44	Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 ...	[more]

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TCONS_00027985-protein (polypeptide) - C. hemisphaerica