TCONS_00028160-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00028160-protein
Unique Name	TCONS_00028160-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	897

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00028160-protein ID=TCONS_00028160-protein|Name=TCONS_00028160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=897bp
MSAEPRDDLVEHNEKTAEEPVIVPTEESKDENIDGDENIDGDENIDEDEN
IDEDEEYEEEEDEDEEPKLKYERIGNSFQEILAEDAASCMTVHPKFLALG
THDGVVHILDHQGNHIRNKKFPSHTTIVHQISIERNGEYVASCSGDGRVV
INGLYTAENNVQQTFDCPVKAVGLHPEYGHRGNKQYVIGVGEKLKLFEKG
WLKTKQTVLHAGVGYVHSVQWKANFIAWAHAQGVEVYDTNTKNRISHIEN
ENNGKYHQDLYNCNICWKDDRTILIAWADVIKVCVVKQRQANDVRGLPTH
YVEIVHMFETDFFAAGICPFVDELAVLAYFPPVEEGTKKGSAQRPHLIVL
QPNGIDSYNETSTDALSVRGFEEYLCINYHLEHVSEEQLFYIVSPKDIII
ARPRDVDDHIAFLLEREEFEKAMKQAEAKQSELKKFTLLGVGRTYLDNLV
KRKRFTEAAQLCDQVLGVSKKLWEEYVYTFAKHNQLKAITPNIPYRNPTL
DSAIYEMVLNEYLLTDHKGFHNLIRDWPTDLYRSKTIIHSLNAKLREEPN
DTTLSRTLATLYEHEKKYSDALQIYLGLNHPDVFDMIHRHKLIEFVQNKC
IKLMAIDVEKATDLFTENTDQLSVENVVKQLKNQKKLLHQYLHTLFLKDK
QLGQNFHDLQVELYAEFERARLLPFLKHSHYYQLEKAFEICEERDYVEEM
VFLLGRMGNSKKALMLIIEKLRDINAAIDFAKEEHDEELWDDLITHCLDK
PAFIKELLFNIGTHVDPKRLIKRIPPGLEIPNLRDALVKILQDFNLQVSL
HEGCKTILDKDSVGLIHRQVKVQNRGYAVTENDKCCSCQGKLVVNDSRKG
KSLVCFGCQHYFHDVCLQQSGSAHQQDLFCPICASKKSNQKRKSIRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015941	XLOC_015941	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00028160	TCONS_00028160	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000547	Clathrin_H-chain/VPS_repeat
IPR019453	VPS39/TGF_beta_rcpt-assoc_2
IPR011990	TPR-like_helical_dom
IPR015943	WD40/YVTN_repeat-like_dom
IPR016902	VPS41
IPR013083	Znf_RING/FYVE/PHD
IPR019786	Zinc_finger_PHD-type_CS
IPR001841	Znf_RING
IPR017986	WD40_repeat_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport
GO:0046907	intracellular transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0046907	intracellular transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 416..436
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 820..886
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	SMART	SM00299	CLH_2	coord: 615..756 e-value: 3.4E-26 score: 103.0
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 616..754 e-value: 5.1E-27 score: 94.4
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 615..756 score: 30.843
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	PFAM	PF10367	Vps39_2	coord: 757..859 e-value: 8.1E-5 score: 22.9
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 646..840 e-value: 4.3E-38 score: 130.8 coord: 371..645 e-value: 8.0E-9 score: 34.6
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 449..477 coord: 541..576
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 9..336 e-value: 5.2E-17 score: 61.0
IPR016902	Vacuolar protein sorting-associated protein 41	PIRSF	PIRSF028921	Vps41	coord: 4..878 e-value: 7.1E-268 score: 888.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 841..897 e-value: 1.2E-5 score: 24.6
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 835..883
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 835..883 score: 9.126
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 84..278

Blast

[Close]

BLAST of TCONS_00028160-protein vs. Swiss-Prot (Human)
Match: VPS41 (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens GN=VPS41 PE=1 SV=3)

HSP 1 Score: 797.349 bits (2058), Expect = 0.000e+0
Identity = 387/821 (47.14%), Postives = 566/821 (68.94%), Query Frame = 0

Query:   67 PKLKYERIGNSFQEILAEDAASCMTVHPKFLALGTHDGVVHILDHQGNHIRNKKFPSHTTIVHQISIERNGEYVASCSGDGRVVINGLYTAENNVQQTFDCPVKAVGLHPEYGHRGNKQYVIGVGEKLKLFEKGWL-KTKQTVLHAGVGYVHSVQWKANFIAWAHAQGVEVYDTNTKNRISHIENENNGKYHQDLYNCNICWKDDRTILIAWADVIKVCVVKQRQANDVRGLPTHYVEIVHMFETDFFAAGICPFVDELAVLAYFPPVEEGTKKGSAQRPHLIVLQPNGIDSYNETSTDALSVRGFEEYLCINYHLEHVSEEQLFYIVSPKDIIIARPRDVDDHIAFLLEREEFEKAMKQAEAKQSELKKFTLLGVGRTYLDNLVKRKRFTEAAQLCDQVLGVSKKLWEEYVYTFAKHNQLKAITPNIPYRNPTLDSAIYEMVLNEYLLTDHKGFHNLIRDWPTDLYRSKTIIHSLNAKLREEPNDTTLSRTLATLYEHEKKYSDALQIYLGLNHPDVFDMIHRHKLIEFVQNKCIKLMAIDVEKATDLFTENTDQLSVENVVKQLKNQKKLLHQYLHTLFLKDKQLGQNFHDLQVELYAEFERARLLPFLKHSHYYQLEKAFEICEERDYVEEMVFLLGRMGNSKKALMLIIEKLRDINAAIDFAKEEHDEELWDDLITHCLDKPAFIKELLFNIGTHVDPKRLIKRIPPGLEIPNLRDALVKILQDFNLQVSLHEGCKTILDKDSVGLIHRQVKVQNRGYAVTENDKCCSCQGKLVVNDSRKGKSLVCFGCQHYFHDVCLQQSGSAHQQDLFCPICASK 886
            PKLKYER+ N   EIL +DAASCMTVH KFLALGTH G V++LD QGN    +KF      ++QIS++ +GE++  CS DG+V + GLY+ E    +TFDCP+K + +HP +     KQ+V G G+KL LFE+ W+ + K  VLH G G + SV+W+ + IAWA+  GV+++D  +K RI+++  ++      D+Y C++CWKD+ T++I W   +KVC VK+R A+++R LP+ YVEIV  FET+F+ +G+ P  D+L VL+Y   + E T++    RP L ++QP   ++  E S+DAL+VRGF+E  C +YHLE+   E LFYIVSP+D+++A+ RD DDHI +LLE++++E+A+  AE  Q  +K+  +L +G  Y+++LV+R  +  AA+ C ++LG +  LWE  VY F +  QLKAI+P +P  +P L   IYEM+L+E+L +D++GF  LIR+WP DLY +  I+ ++   L+++  + TL +TLA LY ++K Y +AL+IYL L H DVF +IH+H L   +++K + LM  D EKA D+  +N D++S++ VV++L+++ +L H YLH LF +D   GQ +H+ Q+ LYAE++R  LLPFL+ S +  LEKA EIC++R++VEE V+LL RMGNS+ AL +I+E+L D++ AI+FAKE+ D ELW+DLI + +DKP FI  LL NIGTHVDP  LI RI  G+EIPNLRD+LVKILQD+NLQ+ L EGCK IL  DS+ L+ +  + Q +G  V E + C SC   ++ +D+ K  S+V F C+H FH  CL    S +    FC IC++K
Sbjct:   28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGN--ITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEE-FHETFDCPIKIIAVHPHFVRSSCKQFVTG-GKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDIISKQRITNVPRDDIS-LRPDMYPCSLCWKDNVTLIIGWGTSVKVCSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCARPRLDIIQPLS-ETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMP-SMNSAAQFCNICSAK 841

The following BLAST results are available for this feature:

BLAST of TCONS_00028160-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00028160-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS41	0.000e+0	47.14	Vacuolar protein sorting-associated protein 41 hom...	[more]

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TCONS_00028160-protein (polypeptide) - C. hemisphaerica