TCONS_00028402-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028402-protein
Unique NameTCONS_00028402-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028402-protein ID=TCONS_00028402-protein|Name=TCONS_00028402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MAQQNTAYDEKVRQELECSICIDQYQKPKLLGCMHTFCEPCITRLIKNGT
ISCPQCRQVSKVPNGVSGLSTNYIAQNIIEKLKTSARGNQPCCHDCANGI
PATNHCKNCVLNLCKDCTNYHQRCVRFVGHCIVAVSSVSQESVNQVRYCA
KHKELLKYFCENCKVVVCNDCMISNQHKQHSMSLITEAKEKAKKELKQKL
LKGLECKQNLLNTHKEGENFKKRVEAAEDKSVLLVKKVFVEIRKEVAKRE
KQLVDQIKKESNFQSFDKFSTALKKISDSLEYVKEVMKNDNYDNMEIIMD
LSNHLDLLDKEFDFNKKYHSYENPNQHHHQNQMHGGLYYSQHQHQQHQPL
LIKPQQNKVFICEQKGNIHHQSYHQATSTNNLSFQMTLVERDLAPNRNHK
ITQNLNEFQI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016092XLOC_016092Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028402TCONS_00028402Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 88..135
e-value: 4.2
score: 1.0
coord: 144..185
e-value: 3.4E-7
score: 39.9
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 145..183
e-value: 3.4E-9
score: 36.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 144..185
score: 11.533
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 18..56
e-value: 2.6E-7
score: 40.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..57
score: 12.725
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 17..59
e-value: 1.54787E-9
score: 52.448
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 129..195
e-value: 8.5E-7
score: 28.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..125
e-value: 8.2E-19
score: 67.2
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 18..56
e-value: 3.0E-9
score: 36.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 33..42
NoneNo IPR availableCDDcd00021BBOXcoord: 147..185
e-value: 0.00224501
score: 34.5704
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 143..200
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 10..83

Blast
[Close]
BLAST of TCONS_00028402-protein vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.682e-26
Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 0 
Query:   16 LECSICIDQYQKPKLLGCMHTFCEPCITRLIKNGTISCPQCRQVSKV-PNGVSGLSTNYIAQNIIEKLKTSA----RGNQPCCHDC------ANGIPATNHCKNCVLNLCKDCTNYHQ--------RCVRFVGHCIVAVSSVSQESVNQVRYCAKHK-ELLKYFCENCKVVVCNDCMISNQHKQHSMSLITEAKEKAKKELKQKLLKGLE 205
            L C IC++Q + PK L C+HT+C+ C+ +L   G + CP+CR+   V P GV+   TN+    +++ +K  A    R  +P C  C      + G PAT  C +C  +LC+ C + H+        R V  VG+        ++E   Q   C +H  E L++ C+ C  ++C +C + + H  H    + EA  +A++   + LL G++
Sbjct:   19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARE--RQAAQCPQHPGEALRFLCQPCSQLLCRECRL-DPHLDHPCLPLAEAV-RARRPGLEGLLAGVD 224
The following BLAST results are available for this feature:
BLAST of TCONS_00028402-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRI562.682e-2630.00E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens... [more]
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