TCONS_00028437-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028437-protein
Unique NameTCONS_00028437-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028437-protein ID=TCONS_00028437-protein|Name=TCONS_00028437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MSQDEIEKKIAVRTFKVIIIGDSNVGKTCLTLRAAAGTFPSRTEATIGVD
FKEKLIKFGEEKVKLQLWDSAGQERFRHSMVPHYYRNVHAVIFVYDVTRK
ASFENIEKWIEEFRCNVITNSQKVPQLIIGNKCDLHADRQVSETDVKALA
SLHGLPFWETSAKSELEMDTVETIFQSLGETLFYNTPLKDFPPHFSTTIQ
QQHHAGLRVNQSLSQSSDDITKKNSVKLKRKSRKSRKKKSPNLEEESGEK
SGCCKTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016108XLOC_016108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028437TCONS_00028437Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 38..54
score: 32.86
coord: 157..179
score: 24.24
coord: 122..135
score: 43.88
coord: 56..78
score: 43.4
coord: 15..36
score: 45.42
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 20..220
e-value: 2.8E-5
score: 25.7
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 15..185
e-value: 6.7E-72
score: 254.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 12..185
e-value: 2.8E-18
score: 76.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 17..185
e-value: 1.9E-11
score: 27.0
NoneNo IPR availableGENE3D3.30.70.1390coord: 13..79
e-value: 2.0E-24
score: 84.9
NoneNo IPR availableGENE3D3.40.50.300coord: 80..181
e-value: 8.7E-33
score: 111.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..257
NoneNo IPR availablePROSITEPS51419RABcoord: 7..254
score: 31.195
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 16..180
e-value: 7.0E-49
score: 165.4
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 14..171
e-value: 8.8E-26
score: 88.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..194

Blast
[Close]
BLAST of TCONS_00028437-protein vs. Swiss-Prot (Human)
Match: RB33B (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.924e-67
Identity = 96/176 (54.55%), Postives = 127/176 (72.16%), Query Frame = 0 
Query:   13 RTFKVIIIGDSNVGKTCLTLRAAAGTFPSRTEATIGVDFKEKLIKFGEEKVKLQLWDSAGQERFRHSMVPHYYRNVHAVIFVYDVTRKASFENIEKWIEEFRCNVITNSQKVPQLIIGNKCDLHADRQVSETDVKALASLHGLPFWETSAKSELEMDTVETIFQSLGETLFYNTPL 188
            R FK+I+IGDSNVGKTCLT R  AG FP RTEATIGVDF+E+ ++   E++K+QLWD+AGQERFR SMV HYYRNVHAV+FVYD+T  ASF ++  WIEE + +++ N   +P++++GNKCDL +  QV     +  A  H +P +ETSAK+  + D VE IF +L   L  + PL
Sbjct:   32 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLAND--IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPL 205
The following BLAST results are available for this feature:
BLAST of TCONS_00028437-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB33B3.924e-6754.55Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
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