TCONS_00028450-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028450-protein
Unique NameTCONS_00028450-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028450-protein ID=TCONS_00028450-protein|Name=TCONS_00028450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MYPGRAVRKEHPQLRTPVKDLQTRVAQQSPSNSVSPLVSPKRLNKPNGKG
ETLLHVACNKRKIHRIKALIEMGAKVNTQDNAGWTPLHEACCFGNHEVVQ
ELMKAPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDL
LHLRRADGKTPLDICREPSAMKTLLKRYENVESSSDYTNVSIVANQQVAF
MKLDATTQRLWSRFITM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016121XLOC_016121Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028450TCONS_00028450Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 122..152
e-value: 0.013
score: 24.7
coord: 157..183
e-value: 3900.0
score: 0.6
coord: 82..112
e-value: 0.0011
score: 28.2
coord: 49..78
e-value: 0.075
score: 22.2
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 49..81
score: 11.995
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 82..104
score: 8.523
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 122..146
score: 9.725
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 37..206
e-value: 6.1E-32
score: 110.1
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 34..111
e-value: 2.2E-13
score: 50.5
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 49..162
score: 24.029
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 42..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableCDDcd00204ANKcoord: 44..175
e-value: 5.01575E-27
score: 100.151

Blast
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BLAST of TCONS_00028450-protein vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.446e-27
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 0 
Query:   37 LVSPKRLNKPNGKGETLLHVACNKRKIHRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQELM-KAPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDLLHLRRADGKTPLDICREPSAMKTLL 175
            +V     +K N KGET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE++ + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG  LL  R A G+ PLD    P   + L 
Sbjct:  794 VVKKMNFHKTNLKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNAKGELPLDYVVSPQIKEELF 927
The following BLAST results are available for this feature:
BLAST of TCONS_00028450-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLF11.446e-2742.55SMC5-SMC6 complex localization factor protein 1 OS... [more]
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