TCONS_00028525-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028525-protein
Unique NameTCONS_00028525-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028525-protein ID=TCONS_00028525-protein|Name=TCONS_00028525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp
MYRDEDQEVPYIYASDDPESNICHEDSTSLRTKKSTEDVDLAGKSSFYSN
EEKTPFDTQDLFQDLSQMQEHWMRAAQVKDDQFVPDLLSNQNSCGGVTME
TSQNNNGVQQQQTIGGDIKEKRLVEQQDNCAKKKQFVQTVEYGPVQIKIE
EEEEEEAEKLENKPSCYLIKNEPLDALTPSILPHQVRRSSAPAELLGIPD
RHSLGNLLSAHDSYGSTSNLSLLSPQSDENYQIPSPCSTIDYIESVRSPI
YPPLTGACATGSDRSTLQPPSQCPSPMPCSPIHHQPPSPYMQPPVDDFPL
SAPCSPAPPNIQRKLSHEYNPTTVPMLEVKSEPLDDFRPVFSNSRDCSPV
RYPVSPVSPNNNVSNHGDKLNNNGSNVNGGLPSPKYENKNKQRFSPYSNG
RYLYKPSFESTNGSSSTTQQRTYHRRGTLQLWQFLVALLSEKECRPYISW
IGRGLEFKLIDPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVA
GERYVYRFVCNPEALFNLAFPDGMRPLLKPQCCQPQKVTNEQMLAGSRDF
SSSSSSASASTSNSSASQQPQPGSSSPCIIHTNTPAFERYPVPRNDSNWK
NEHYRYQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016170XLOC_016170Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028525TCONS_00028525Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000418Ets domainPRINTSPR00454ETSDOMAINcoord: 472..490
score: 68.72
coord: 453..471
score: 53.14
coord: 429..442
score: 53.31
coord: 491..509
score: 52.04
IPR000418Ets domainSMARTSM00413etsneu2coord: 428..513
e-value: 2.2E-52
score: 190.0
IPR000418Ets domainPFAMPF00178Etscoord: 430..509
e-value: 3.9E-35
score: 120.1
IPR000418Ets domainPROSITEPS00346ETS_DOMAIN_2coord: 475..490
IPR000418Ets domainPROSITEPS00345ETS_DOMAIN_1coord: 431..439
IPR000418Ets domainPROSITEPS50061ETS_DOMAIN_3coord: 429..509
score: 39.404
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 413..535
e-value: 3.4E-51
score: 171.7
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 427..573
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..396
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..594

Blast
[Close]
BLAST of TCONS_00028525-protein vs. Swiss-Prot (Human)
Match: ETV1 (ETS translocation variant 1 OS=Homo sapiens GN=ETV1 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 2.381e-56
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 0 
Query:  422 TYHRRGTLQLWQFLVALLSEKECRPYISWIGRGLEFKLIDPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYRFVCNPEALFNLAFPDGMRPLLK 529
            TY RRG+LQLWQFLVALL +     +I+W GRG+EFKLI+PEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY+FVC+PEALF++AFPD  RPLLK
Sbjct:  328 TYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLK 435
The following BLAST results are available for this feature:
BLAST of TCONS_00028525-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETV12.381e-5681.48ETS translocation variant 1 OS=Homo sapiens GN=ETV... [more]
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