TCONS_00028735-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028735-protein
Unique NameTCONS_00028735-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028735-protein ID=TCONS_00028735-protein|Name=TCONS_00028735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MKRNETKKFPCTYPNCTWSFPTNYKLDRHIKSHTGEKAWICNFCAKSFAN
GYNLKEHSKLHTRLTAKQNNVVREETVETTTNIHFDCKDVSIPCPKKRCL
RKFTTEKELAVHLTNHDLQYQCSFDGCHKRFSKPSILKQHEANHTQDRPF
KCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSH
LRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKHANNRPFKCTHTGCEKT
YLTASNLRSHEKVHKRKLLATSDDSDDSEAEETIDTNELMNLPAMDISIM
SKEALVAAAFGEIACNEYMNIDSSQVPKDVDNTIDINVLNESDKEKLKDL
QEEFVRNIYASSVNTDHSFLPSYLVPPGSSNKLNIESKEKPTMSTLDEPV
TLEPSMELSTGHLEIDGACFQASSCMPDHIYSNKLYENSSTVNLQDIH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016298XLOC_016298Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028735TCONS_00028735Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 92..116
e-value: 3.5
score: 16.6
coord: 9..33
e-value: 0.0042
score: 26.3
coord: 180..204
e-value: 0.0013
score: 28.0
coord: 120..144
e-value: 0.011
score: 24.9
coord: 210..234
e-value: 0.4
score: 19.7
coord: 150..174
e-value: 0.0012
score: 28.1
coord: 240..264
e-value: 0.003
score: 26.8
coord: 39..61
e-value: 0.048
score: 22.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 242..264
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 152..174
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 182..204
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 41..61
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 212..234
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 122..144
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 11..33
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 9..38
score: 12.341
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 150..179
score: 12.321
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 240..264
score: 10.408
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 39..66
score: 10.845
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 210..239
score: 11.51
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 180..209
score: 12.986
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 120..149
score: 13.235
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 120..174
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 160..216
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 10..61
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 221..266
NoneNo IPR availableGENE3D3.30.160.60coord: 141..168
e-value: 1.6E-13
score: 49.9
coord: 169..197
e-value: 4.0E-13
score: 48.7
coord: 30..67
e-value: 4.8E-13
score: 48.4
NoneNo IPR availableGENE3D2.40.155.10coord: 110..140
e-value: 1.2E-7
score: 31.5
NoneNo IPR availableGENE3D3.30.160.60coord: 8..29
e-value: 4.9E-9
score: 35.6
coord: 91..109
e-value: 0.12
score: 11.9
NoneNo IPR availableGENE3D2.40.155.10coord: 198..406
e-value: 6.1E-22
score: 78.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 150..174
e-value: 0.0021
score: 18.3
coord: 9..33
e-value: 0.0011
score: 19.2

Blast
[Close]
BLAST of TCONS_00028735-protein vs. Swiss-Prot (Human)
Match: ZXDC (Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.010e-42
Identity = 111/356 (31.18%), Postives = 169/356 (47.47%), Query Frame = 0 
Query:    7 KKFPCTYPNCTWSFPTNYKLDRHIKSHTGEKAWIC--NFCAKSFANGYNLKEHSKLHTRLTAKQNNVVREE-----TVETTTNIHFDCKDVSIPCPKKRCLRKFTTEKELAVHLTNHDLQ---YQCSFDGCHKRFSKPSILKQHEANHTQDRPFKCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSHLRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKHANNRPF---KCTHTGCEKTYLTASNLRSHE-KVHKRK------LLATSDDSDDSEAEETIDTNELMNLPAMDISIMSKEALVAAAFGEIACNEYMN-----IDSSQVPKDVDNTIDIN 337
            + F C    C W+F T+YKL RH++SH   + + C    C K F   YNLK H K H + +  +  V  E       + +    HF+  +    C    C + F T   L  H   H  +   + CSF GC K++ K   LK H  +HT +RPF CD +SC  +F +  KL RH   H++ R F+CPVEGC K+F   E+L  H  TH  TKP +CP+E C   FS  S+L +H  KH  +      +C  + C + + +  ++++H  + H R+      L A S  +  SE   +   +EL N   MD++ +  +    A+      +E +N     ID + V   +   +  N
Sbjct:  206 RPFKCPLEGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEVCAERFPTHAKLSSHQRSHFE-PERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFICDSDSCGWTFTSMSKLLRHRRKHDDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCARFSARSSLYIHSKKHVQDVGAPKSRCPVSTCNRLFTSKHSMKAHMVRQHSRRQDLLPQLEAPSSLTPSSEL-SSPGQSELTN---MDLAALFSDTPANASGSAGGSDEALNSGILTIDVTSVSSSLGGNLPAN 556

HSP 2 Score: 107.071 bits (266), Expect = 1.278e-24
Identity = 62/175 (35.43%), Postives = 80/175 (45.71%), Query Frame = 0 
Query:   94 CPKKRCLRKFTTEKELAVHLTNHDLQYQCSFDGCHKRFSKPSILKQHEANHTQDRPFKCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSHLRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKH-ANNRPFKCTHTGCEKTYLTASNLRSHEKVHKRK 267
            CP+ +C   F  + +L VHL  H         G   R                 RPFKC  E C  +F T  KLKRH+  H+  R F CPV GC K F     L +H++ H+     KC  E C + F   + L  H   H    RP+KC   GCEKT++T S L SH + H R+
Sbjct:  177 CPEPQCALAFAKKHQLKVHLLTH--------GGGQGR-----------------RPFKCPLEGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKC--EVCAERFPTHAKLSSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFRE 324
The following BLAST results are available for this feature:
BLAST of TCONS_00028735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZXDC1.010e-4231.18Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC P... [more]
back to top