TCONS_00046137-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046137-protein
Unique NameTCONS_00046137-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046137-protein ID=TCONS_00046137-protein|Name=TCONS_00046137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MSQGASKTLCRYFLHGACSRGSTCTFAHDLKAQSNNVCKFYMMGKCGYGQ
QCRYDHVKATKIIPPHPPTDTSRMTVLKKKEPPKKIITLNEDKDWSSAPS
FIPGKKIHKTTKVKDEDVIKEVSFSKMASFNVSNTTTEDIYDEQTLYQEG
ISFDGEQNDLLCPFAAHRECPYGEECEYIHGEICDICGLQALHPTNKIQR
KEHQAQCESRLEQDMKIAFAAQRSDGVTCSICMDVVKGKSDPSERYFGLL
ENCIHPFCLTCIRKWRSSSLDKNVVRTCPICREQSWFVTPSEFWIDDVTE
KKEAIEGYKNYLNTKHCRLFDQGNGTCPFGTSCFYKHIYPDGREEERKPD
LRYLEDGVGNIKIHKTPRLNEFIEQRE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029474XLOC_029474Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046137TCONS_00046137Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR000571Znf_CCCH
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 229..281
e-value: 1.7E-6
score: 37.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 229..282
score: 12.209
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 228..283
e-value: 3.14156E-4
score: 37.04
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 158..182
e-value: 0.2
score: 20.8
coord: 313..339
e-value: 0.74
score: 17.3
coord: 5..30
e-value: 1.6E-6
score: 37.7
coord: 34..58
e-value: 0.0023
score: 27.2
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 161..182
e-value: 3.7E-5
score: 23.4
coord: 37..57
e-value: 1.2E-4
score: 21.8
coord: 8..29
e-value: 1.7E-6
score: 27.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 161..183
score: 11.16
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 32..59
score: 13.469
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 311..340
score: 13.619
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 4..31
score: 15.46
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 35..56
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 6..29
NoneNo IPR availableGENE3D4.10.1000.10coord: 75..196
e-value: 1.0E-4
score: 21.5
NoneNo IPR availableGENE3D4.10.1000.10coord: 1..63
e-value: 1.1E-16
score: 60.0
coord: 299..366
e-value: 7.1E-6
score: 25.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 228..288
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 229..281
e-value: 1.4E-7
score: 31.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 212..292
e-value: 4.2E-10
score: 38.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 253..262

Blast
[Close]
BLAST of TCONS_00046137-protein vs. Swiss-Prot (Human)
Match: MKRN1 (E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 7.197e-87
Identity = 151/395 (38.23%), Postives = 211/395 (53.42%), Query Frame = 0 
Query:    7 KTLCRYFLHGACSRGSTCTFAHDLK-AQSNNVCKFYMMGKCGYGQQCRYDHVKATKIIPPHPPTDTSRMTVLKKKEPPKKIITLNE-------------------DKDWSSAPSFIPGKKIHKTTKVKDEDVIKEVSFSKMASFNVSNTTTEDIYDEQTLYQEGISFDGEQNDLLCPFAAHRECPYGEECEYIHGEICDICGLQALHPTNKIQRKEHQAQCESRLEQDMKIAFAAQRSDGVTCSICMDVVKGKSDPSERYFGLLENCIHPFCLTCIRKWRSS-SLDKNVVRTCPICREQSWFVTPSEFWIDDVTEKKEAIEGYKNYLNTKHCRLFDQGNGTCPFGTSCFYKHIYPDGREEERKPDLRYLEDGVGNIKIHKTPRLNEF---IEQRE 377
            +  CRYF+HG C  G  C ++HDL  +  + VCK++  G C YG +CRY+H K  K         T++ ++         +  L E                    +DW +A  F+PG+     T     +   + S +K           E+   EQT          E    LCP+AA  EC YGE C Y+HG+ CD+CGLQ LHP +  QR +H   C    E+DM+++FA QRS  + C ICM+VV  K++PSER FG+L NC H +CL CIRKWRS+   +  ++++CP CR  S FV PSE+W+++  EK++ I  YK  ++ K CR FD+G G+CPFG +CFYKH YPDGR EE +         VG    ++  R N F   IE+RE
Sbjct:   58 QVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTK-----------EESEKEQTAV--------ETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQ------RQKVGTSSRYRAQRRNHFWELIEERE 427
The following BLAST results are available for this feature:
BLAST of TCONS_00046137-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MKRN17.197e-8738.23E3 ubiquitin-protein ligase makorin-1 OS=Homo sapi... [more]
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