TCONS_00046187-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046187-protein
Unique NameTCONS_00046187-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1125

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046187-protein ID=TCONS_00046187-protein|Name=TCONS_00046187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1125bp
MVELDDEHLQNSPIKRVEDKWKLVPAFLKVKGLVKQHIDSFNYFVNSEIK
EIVKANGKVQTDADPVWYLKYLDVHVGTPDVEESFNVSRPVAPHECRLRD
LSYSAPITVDIEYTRGNQRVVRNNLSIGRMPIMLRSSNCVLNGKTEAEQA
KLNECPLDPGGYFIVRGSEKVILIQEQLSKNRMIVEPDSKKHLVSCSVTS
TTHEVKSRTAVIQKNGKFYLKHNTFTEDIPICAVFKAMGIESDQEIVQMI
GIEEEVMNYFAATIEEGNMLQIYTKMQAMNYLASKIRQRQVWTKPMSKMD
ECKQLINKTLLAHVPVTKNNFRPKGAYLALMVRRIILAVKGLIKMDDRDY
YGNKRLELAGQLVSLLFEDLFKRFNNELKKIADTTIPKPRAAQFDIVRHM
RQDLITNGLVNAISTGNWIIKRFNMHRVGVTQVLSRLSYISALGMMTRIT
SQFEKTRKVSGPRSLQPSQWGILCPSDTPEGEGCGLVKNLALMTHVTTDQ
NEDPIRRLAYNLGVEDINLLSGEELSSPKVYMVFLNGNILGVIRNHSHLI
RTFRLMRRAGYINEFVSIYPSNSHKCVYISSDGGRMCRPYIIAKKGRPNV
TENHINELIQGVRTFEDFLHQGLIEYLDVNELNDSHIALYEEECNKETTH
LEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRID
TLMYLLVYPQRPMVKSRTIEIINFEKLPAGQNATVAVMSYSGYDIEDALI
INKSSLDRGFGRCLVYRKQVCQLRRYANQTFDRVMGPGRDATTGEIIWKH
KGLDADGIVQPGERISDRQVLVNKSMPTVTNQIAGHNAGTPEYKDVPISY
RGPIPSYVEKVLLTSTMEESFLIKMLMRQTRRPEIGDKFSSRHGQKGVCG
LIVQQEDMPFSDLGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLEGKF
HYGTAFGGSKVVDVCETLVQNGFNYAGKDYITSGITGEPLTAYIYMGPVY
YQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY
GASMLIMERLMISSDAFEIDVCGQCGLIGYSGWCSYCRSSHHISTLQIPY
ACKLLFQELQSMNIVPRITLQKYLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029497XLOC_029497Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046187TCONS_00046187Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNA_pol_su2_6
IPR007644RNA_pol_bsu_protrusion
IPR007642RNA_pol_Rpb2_2
IPR007645RNA_pol_Rpb2_3
IPR007647RNA_pol_Rpb2_5
IPR007646RNA_pol_Rpb2_4
IPR007641RNA_pol_Rpb2_7
IPR007121RNA_pol_bsu_CS
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1800.10coord: 1036..1113
e-value: 3.7E-26
score: 90.8
NoneNo IPR availableGENE3D3.90.1100.10coord: 24..287
e-value: 1.3E-31
score: 109.3
coord: 296..703
e-value: 2.3E-59
score: 200.5
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 13..1122
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3D2.40.270.10coord: 823..1019
e-value: 5.5E-63
score: 211.7
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 662..1033
e-value: 2.5E-124
score: 415.2
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 32..398
e-value: 9.1E-53
score: 178.7
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 180..357
e-value: 4.4E-25
score: 88.3
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 432..496
e-value: 5.8E-20
score: 71.1
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 615..655
e-value: 8.3E-8
score: 32.6
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 533..593
e-value: 4.6E-27
score: 94.0
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1035..1120
e-value: 3.2E-34
score: 117.1
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 886..898
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 33..1118
e-value: 0.0
score: 1170.42

Blast
[Close]
BLAST of TCONS_00046187-protein vs. Swiss-Prot (Human)
Match: RPC2 (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2)

HSP 1 Score: 1810.04 bits (4687), Expect = 0.000e+0
Identity = 851/1116 (76.25%), Postives = 978/1116 (87.63%), Query Frame = 0 
Query:   12 SPIKRVEDKWKLVPAFLKVKGLVKQHIDSFNYFVNSEIKEIVKANGKVQTDADPVWYLKYLDVHVGTPDVEESFNVSRPVAPHECRLRDLSYSAPITVDIEYTRGNQRVVRNNLSIGRMPIMLRSSNCVLNGKTEAEQAKLNECPLDPGGYFIVRGSEKVILIQEQLSKNRMIVEPDSKKHLVSCSVTSTTHEVKSRTAVIQKNGKFYLKHNTFTEDIPICAVFKAMGIESDQEIVQMIGIEEEVMNYFAATIEEGNMLQIYTKMQAMNYLASKIRQRQVWT--KPMSKMDECKQLINKTLLAHVPVTKNNFRPKGAYLALMVRRIILAVKGLIKMDDRDYYGNKRLELAGQLVSLLFEDLFKRFNNELKKIADTTIPKPRAAQFDIVRHMRQDLITNGLVNAISTGNWIIKRFNMHRVGVTQVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQPSQWGILCPSDTPEGEGCGLVKNLALMTHVTTDQNEDPIRRLAYNLGVEDINLLSGEELSSPKVYMVFLNGNILGVIRNHSHLIRTFRLMRRAGYINEFVSIYPSNSHKCVYISSDGGRMCRPYIIAKKGRPNVTENHINELIQGVRTFEDFLHQGLIEYLDVNELNDSHIALYEEECNKETTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLVYPQRPMVKSRTIEIINFEKLPAGQNATVAVMSYSGYDIEDALIINKSSLDRGFGRCLVYRKQVCQLRRYANQTFDRVMGPGRDATTGEIIWKHKGLDADGIVQPGERISDRQVLVNKSMPTVTN-QIAGHNA-GTPEYKDVPISYRGPIPSYVEKVLLTSTMEESFLIKMLMRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFSDLGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLEGKFHYGTAFGGSKVVDVCETLVQNGFNYAGKDYITSGITGEPLTAYIYMGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLIMERLMISSDAFEIDVCGQCGLIGYSGWCSYCRSSHHISTLQIPYACKLLFQELQSMNIVPRITLQKY 1123
            +PI  VE+KW+L+PAFLKVKGLVKQHIDSFNYF+N EIK+I+KAN KV +DADP+WYLKYL+++VG PDVEESFNV+RPV+PHECRLRD++YSAPITVDIEYTRG+QR++RN L IGRMPIMLRSSNCVL GKT AE AKLNECPLDPGGYFIV+G EKVILIQEQLSKNR+IVE D +K  V  SVTS+THE KSRT +  K G+FYL+HNT +EDIPI  +FKAMG+ESDQEIVQMIG EE VM  F  ++EE    QI+T+MQA+ Y+ +K+R++++W      +K++E ++L+  T+L HVPV + NFR K  Y A+MVRR+ILA +G  K+DDRDYYGNKRLELAGQL+SLLFEDLFK+FN+E+KKIAD  IPK RAAQFD+V+HMRQD ITNG+VNAISTGNW +KRF M R GVTQVLSRLSYISALGMMTRI+SQFEKTRKVSGPRSLQPSQWG+LCPSDTPEGE CGLVKNLALMTH+TTD  + PI +LA NLGVED+NLL GEELS P V++VFLNGNILGVIR+H  L+ TFRLMRRAGYINEFVSI  + + +CVYISSDGGR+CRPYII KK +P VT  H+ EL QG R FEDFLH+ L+EYLDVNE ND +IALYE   NK+TTHLEIEPFTLLGVCAGL+PYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLL YPQ+PMVK++TIE+I FEKLPAGQNATVAVMSYSGYDIEDAL++NK+SLDRGFGRCLVY+   C L+RY NQTFD+VMGP  DA T + IW+H+ LDADGI  PGE++ ++QVLVNKSMPTVT   + G N    P+YKDVPI+Y+G   SY+EKV+++S  E++FLIKML+RQTRRPEIGDKFSSRHGQKGVCGLIV QEDMPF D GICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL+G+FHYGTAFGGSKV DVCE LV++G+NY GKDY+TSGITGEPL AYIY GPVYYQKLKHMVLDKMHARA+GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASML++ERLMISSDAFE+DVCGQCGL+GYSGWC YC+SS H+S+L+IPYACKLLFQELQSMNI+PR+ L KY
Sbjct:   18 APIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEAD-RKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKY 1131
The following BLAST results are available for this feature:
BLAST of TCONS_00046187-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC20.000e+076.25DNA-directed RNA polymerase III subunit RPC2 OS=Ho... [more]
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