TCONS_00046928-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046928-protein
Unique NameTCONS_00046928-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046928-protein ID=TCONS_00046928-protein|Name=TCONS_00046928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MVYSNFNAILEFDSESCRESNFIVVTDVNVDGNFLIHHFISHFTKSNGSI
SILGMAQTQTHYSSATHKLGVNLQQLLKDGRLKFIDGLQYVCDAFTDKTN
ERSPLKDLTVIVDEAITSTSTHQNGHLFVIDDLTALLNIGCSTQNVFDFV
HHCKVMSEKHNISFLLLSHADMEDDEYAVLSSRLQQYASLHINAQALRTG
YSKDLSGEMQVYNFKNPYATSKKVLHFKLMDRDMRTFAPGTSSAVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029938XLOC_029938Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046928TCONS_00046928Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018627ELP6
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0033588 Elongator holoenzyme complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 17..245
e-value: 1.0E-21
score: 77.2
IPR018627Elongation complex protein 6PFAMPF09807ELP6coord: 4..231
e-value: 8.0E-46
score: 156.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 35..230

Blast
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BLAST of TCONS_00046928-protein vs. Swiss-Prot (Human)
Match: ELP6 (Elongator complex protein 6 OS=Homo sapiens GN=ELP6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.282e-27
Identity = 75/270 (27.78%), Postives = 133/270 (49.26%), Query Frame = 0 
Query:    2 VYSNFNAILEFDSESCRESNFIVVTDVNVDGNFLIHHFISHFTKSNGSISILGMAQTQTHYSSATHKLGVNLQQLLKDGRLKFIDGLQYVCDAFTDKTNERSP-----------LKDLTVIVDEAITSTSTHQNGHLF---VIDDLTALLNIGCSTQNVFDFVHHCKV---MSEKHNISFLLLSHADMEDDEYAVLSSRLQQYASLHINAQALRTGYSKDLSGEMQVYNFKNPYATSKKVLH--------FKLMDRDMRTFAPGTSSAVL 246
            ++   N +L    +   +    ++ D   DG+FL+HHF+S + K+N  +  + + Q+ +HYS    KLGV+L    + G+L F++GL+   D       E  P           LK L   V EA+    + +    +   ++DDL+ LL++G     V DF+H+C+       K N+  L+    D ED+E  +L + L   + L + A+ L TG+ +D+ G++++  ++ P   S+  +H        +K+ D+ +  FA G S AVL
Sbjct:    1 MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRIL-WRRP---SQPAVHRDQSFTYQYKIQDKSVSFFAKGMSPAVL 266
The following BLAST results are available for this feature:
BLAST of TCONS_00046928-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELP65.282e-2727.78Elongator complex protein 6 OS=Homo sapiens GN=ELP... [more]
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